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li lilingdu
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450
@li-lilingdu-1884
Last seen 6.6 years ago
Dear list,
I'm using the 'rtracklayer' package and ran into some problems.
#===========
library(rtracklayer)
browserSession()->toto
browserView(toto)
#===========
Above codes work well and show the right webpage.
however the following code (the last statement) does not work and give
the
error of 'Error in shell.exec(url) : file name conversion problem'
#===========
browserSession()->toto
ucscTrackModes(toto)->togai
tracks(toto)->toto2
tracks(togai)<-sample(toto2,3)
browserView(toto,track=togai)
#===========
Any suggestions? Thanks!
sessionInfo()
R version 2.8.0 (2008-10-20)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] grid tools stats graphics grDevices utils
datasets
methods base
other attached packages:
[1] Rgraphviz_1.18.1 graph_1.20.0 rtracklayer_1.2.1 RCurl_0.91-0
Biobase_2.2.1
loaded via a namespace (and not attached):
[1] Biostrings_2.10.2 cluster_1.11.11 IRanges_1.0.3
lattice_0.17-15
Matrix_0.999375-16 rJava_0.6-0
[7] XML_1.98-1
LiGang