error with get(getOption("device")) in maanova with R 2.8.0
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@rob-tempelman-526
Last seen 10.2 years ago
I downloaded the latest version of maanova (version 1.12.0) from bioconductor that is presumably designed to work with R 2.8.0. However, upon using some of the functions (say gridcheck on the dataset kidney provided with the package), I get the following error message: > data(kidney) > gridcheck(kidney.raw) Error in get(getOption("device")) : invalid first argument It is my understanding that all of the get(getOption("device")) commands now need to be replaced by dev.new() in R 2.8.0. If so, could this be done with this particular package? Thanks, Rob Tempelman [[alternative HTML version deleted]]
Kidney maanova Kidney maanova • 1.3k views
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@wolfgang-huber-3550
Last seen 11 weeks ago
EMBL European Molecular Biology Laborat…
Rob Tempelman ha scritto: > I downloaded the latest version of maanova (version 1.12.0) from bioconductor that is presumably designed to work with R 2.8.0. However, upon using some of the functions (say gridcheck on the dataset kidney provided with the package), I get the following error message: > >> data(kidney) >> gridcheck(kidney.raw) > > Error in get(getOption("device")) : invalid first argument > > > It is my understanding that all of the get(getOption("device")) commands now need to be replaced by dev.new() in R 2.8.0. If so, could this be done with this particular package? > > Thanks, > > Rob Tempelman Hi Rob, just a guess, but you or the authors of maanova might find it instructive to check the R 2.8 release notes "CHANGES IN R VERSION 2.8.0": http://cran.at.r-project.org/src/base/NEW The 'factory-fresh' defaults for options("device") have been changed to refer to the devices as functions in the grDevices namespace and not as names. This makes it more likely that the incorrect (since R 2.5.0) assumption in packages that get(getOption("device"))() will work will catch users of those packages. Best wishes Wolfgang ---------------------------------------------------- Wolfgang Huber, EMBL-EBI, http://www.ebi.ac.uk/huber
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