Dear allI have been working recently on drawing GO graphs of the significantly changing GOs, and have extensively used the instructions for the packages GOstats and TopGO for drawing the post-analysis results (hyperGTest or Fisher's test, respectively) for drawing the GO graphs. I am trying to do this for some yeast data that we collected in a previous project. Unfortunately the functions in or connected to both packages seem to draw the DAGs for only the significant GOs and their connected GOs, and do not allow me to highlight the significant categories on the complete GO DAG for each ontology (CC, BP, or MF). After extensive searches and failure to find something on the Bioconductor forums about this I have chosen to request help. Could somebody please provide me more guidance on how to draw a full GO DAG in R with only significant ones highlighted? An older forum thread that specifically deals with this issue would immensely help, as well as suggestions on how to do this. I am aware that there are a selected number of web-based tools that offer the capabilities but I do not always work online and am sometimes limited by sporadic web access. The ability to do this locally will help substantially. I am currently running R2.7.2 on a MacOSX 10.4.11 PPC. I am happy to provide more information if needed to help me make this work. Any help is highly appreciated. Thank you Regards BALA. [[alternative HTML version deleted]]