Hi, I am a new user of bioconductor package to conduct my gemonic data of gene expression using affymetrix array data. what is the best approach and easy way to get started? Cheers, Ali [[alternative HTML version deleted]]

On Tue, Sep 23, 2008 at 8:21 AM, Abdi Ali <aali6102 at="" gmail.com=""> wrote: > Hi, > > I am a new user of bioconductor package to conduct my gemonic data of gene > expression using affymetrix array data. what is the best approach and easy > way to get started? Hi, Abdi. You might consider starting here: http://bioconductor.org/GettingStarted If you are totally new, I would highly suggest buying a book from the suggestions in the document above. Sean

Hi, On Sep 23, 2008, at 8:21 AM, Abdi Ali wrote: > Hi, > > I am a new user of bioconductor package to conduct my gemonic data > of gene > expression using affymetrix array data. what is the best approach > and easy > way to get started? In addition to what Sean said, the Primer vignette in the affy library is very helpful. After you install the base bioconductor packages, you just: R> library(affy) R> openVignette() R> Select the number that corresponds to "affy - Primer" HTH, -steve -- Steve Lianoglou Graduate Student: Physiology, Biophysics and Systems Biology Weill Cornell Medical College of Cornell University http://cbio.mskcc.org/~lianos