Dear Steffen and James In relation to plotting with makeExonArray, is there a way to display different colours of probes while still being displayed on the same plot? We are trying to use our own data to display probeset results and FIRMA scores, and have found your tool to be most helpful. Thank you very much. Amanda Miotto a.miotto at griffith.edu.au Software Engineer. Research Computing Services INFORMATION SERVICES Griffith University, NATHAN 4111, AUSTRALIA Phone: +61 7 37354419 Fax: +61 7 37356650 Web: http://eResearch.griffith.edu.au/ PRIVILEGED - PRIVATE AND CONFIDENTIAL: This email and any files transmitted with it are intended solely for the use of the addressee(s) and may contain information which is confidential or privileged. If you receive this email and you are not the addressee(s) [or responsible for delivery of the email to the addressee(s)], please disregard the contents of the email, delete the email and notify the author immediately.

Dear Steffen and James In relation to plotting with makeExonArray, is there a way to display different colours of probes while still being displayed on the same plot? We are trying to use our own data to display probeset results and FIRMA scores, and have found your tool to be most helpful. Thank you very much. Amanda Miotto a.miotto at griffith.edu.au Software Engineer. Research Computing Services INFORMATION SERVICES Griffith University, NATHAN 4111, AUSTRALIA Phone: +61 7 37354419 Fax: +61 7 37356650 Web: http://eResearch.griffith.edu.au/ PRIVILEGED - PRIVATE AND CONFIDENTIAL: This email and any files transmitted with it are intended solely for the use of the addressee(s) and may contain information which is confidential or privileged. If you receive this email and you are not the addressee(s) [or responsible for delivery of the email to the addressee(s)], please disregard the contents of the email, delete the email and notify the author immediately.

Hi Amanda, I'm not sure if I understand. With makeExonArray you should be able to plot multiple samples in the same plot and color each sample differently. Also the connecting lines, connecting the probeset regions to the genomic locations can be colored differently. Is this what you want to do? Let me know if this helps. Cheers, Steffen > > Dear Steffen and James > > In relation to plotting with makeExonArray, is there a way to display > different colours of probes while still being displayed on the same plot? > We are trying to use our own data to display probeset results and FIRMA > scores, and have found your tool to be most helpful. > Thank you very much. > > > > > Amanda Miotto > a.miotto at griffith.edu.au > > Software Engineer. > Research Computing Services > INFORMATION SERVICES > Griffith University, NATHAN 4111, AUSTRALIA > Phone: +61 7 37354419 Fax: +61 7 37356650 > Web: http://eResearch.griffith.edu.au/ > > PRIVILEGED - PRIVATE AND CONFIDENTIAL: > This email and any files transmitted with it are intended solely for > the use of the addressee(s) and may contain information which is > confidential or privileged. If you receive this email and you are > not the addressee(s) [or responsible for delivery of the email to the > addressee(s)], please disregard the contents of the email, delete the > email and notify the author immediately. >