Hi list, Another GUI interface worth mentioning is genePattern, from the folks at the Broad. It already talks to R (thought not the very latest version, and thus not the latest BioC), and for every command that you run, it shows you the actual R (or Matlab) code that is being run. There are a large number of user submitted modules, suggesting that it is relatively easy to extend GP for your own purposes. In this respect, it is similar to galaxy in that you need to design a simple web page to specify the data and parameters, which then gets passed to your R code. Unlike galaxy, the data in GP remains more persistent, so after you import it, and create and expressionSet style of object, then you can perform different tasks on that data. cheers, Mark On 05/08/2008, at 8:53 AM, Mark Cowley wrote: > galaxy: http://main.g2.bx.psu.edu/ > > On 05/08/2008, at 3:14 AM, Michal Blazejczyk wrote: > >> Hello, >> >> Can someone provide a link to Galaxy? >> >> And since people are providing links, here's one from me: >> http://genomequebec.mcgill.ca/FlexArray/ >> FlexArray is a microarray statistical data analysis software, >> interactive and quite easy to work with, based on Bioconductor, >> for Windows. >> >> Best, >> Michal Blazejczyk >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor