Hi: Recently I have run a number of microfluidic card quantitative PCRs, with which we are able to profile the expression of 96 genes of 4 different samples at once. I'm just comparing 4 different stimuli for 1 specific cell type, and for each stimulus I have three biological replicates. I'm looking for a way to analyze the expression data of the various cards, preferably in R/BioC. Any experience/suggestions/packages that I overlooked? Thanks & kind regards, Bas Jansen