Before you invest too much time yourself, have a look at BioCep, which is essentially a web-based interface to R, Bioconductor and much much more. http://biocep-distrib.r-forge.r-project.org/ I have no idea in which state is BioCep at the moment, but I have seen it working... Best, Oleg Paul Geeleher wrote: > I'm currently developing a web based interface to Bioconductor for an > organization in Ireland as part of a Masters degree. I can give you > more details if you are interested. > > -Paul. > > On Fri, Aug 1, 2008 at 9:54 PM, Scott Markel <smarkel at="" accelrys.com=""> wrote: >> Deanne, >> >> SciTegic Enterprise Server and Pipeline Pilot offer an extensible >> client-server data retrieval, filtering, analysis, and reporting >> platform. Pipeline Pilot comes with many toolkits called collections. >> The Gene Expression Collection's core functionality is built on top of >> BioConductor. The R-Statistics collection can be easily extended to >> add any desired additional BioConductor functionality. The Professional >> client has a drag and drop visual icon/data flow interface; the web >> client can be configured to create different client interfaces. >> >> http://accelrys.com/products/scitegic/component-collections/gene- expression.html >> >> Scott >> >> Deanne Taylor wrote: >>> Dear all: >>> >>> Iis anyone aware of any projects creating an extensible platform that can >>> act as an interface to Bioconductor that could be used to deliver >>> Bioconductor methods to non-command-line-using users? >>> >>> To save some replies: >>> * I am aware of limmaGUI and affylmGUI, but the tcl/tk interface is >>> frustrating to some users who have difficulty installing tcl/tk >>> independently while having R recognize it. Macs and some *nix have been >>> particularly problematic for some reasons. >>> >>> * I am also aware of CARMAweb, bioconductor packages and a few other basic >>> R-web-interfaces, but I would like something more extensible outside of the >>> R framework that could work both in R and in Python/Perl for example. >>> Something more modular. >>> >>> * I'm thinking something like Galaxy or Bioclipse. I realize Ross Lazarus >>> is working on Rgenetics against Galaxy and Galaxy might be a good solution. >>> >>> If anyone is aware of other projects (beginning or ongoing or planned) in >>> this area, I'd deeply appreciate getting pointers to them! >>> >>> Deanne >>> >>> >> -- >> Scott Markel, Ph.D. >> Principal Bioinformatics Architect email: smarkel at accelrys.com >> Accelrys (SciTegic R&D) mobile: +1 858 205 3653 >> 10188 Telesis Court, Suite 100 voice: +1 858 799 5603 >> San Diego, CA 92121 fax: +1 858 799 5222 >> USA web: http://www.accelrys.com >> >> http://www.linkedin.com/in/smarkel >> Board of Directors: International Society for Computational Biology >> Co-chair: ISCB Publications Committee >> Associate Editor: PLoS Computational Biology >> Editorial Board: Briefings in Bioinformatics >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > > -- Dr Oleg Sklyar * EBI-EMBL, Cambridge CB10 1SD, UK * +44-1223-494466