Is there a BioC package for processing affymetrix rat gene ST 1.0 arrays? I can't seem to find it if its there. If not, affy has an "unsupported" cdf to download. What would it take to use that? Mark -- Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 663-0513 Home (no voice mail please) ****************************************************************** [[alternative HTML version deleted]]

Dear Mark One possibility, available at BioC, is package xps. Regards Christian _._._._._._._._._._._._._._._._ C.h.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.u.s.t.r.i.a e.m.a.i.l: cstrato at aon.at _._._._._._._._._._._._._._._._ Mark Kimpel wrote: > Is there a BioC package for processing affymetrix rat gene ST 1.0 arrays? I > can't seem to find it if its there. If not, affy has an "unsupported" cdf to > download. What would it take to use that? > > Mark > >

http://article.gmane.org/gmane.science.biology.informatics.conductor/1 8963/match=oligo+st Mark Kimpel wrote: > Is there a BioC package for processing affymetrix rat gene ST 1.0 arrays? I > can't seem to find it if its there. If not, affy has an "unsupported" cdf to > download. What would it take to use that? > > Mark > -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623