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Kristen K Dang
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50
@kristen-k-dang-2922
Last seen 10.2 years ago
Hello,
I am trying to use the lumiR function from the lumi package to read in
a BeadStudio output file, but I keep getting the following error:
> input_file = "sample_probe_profile.txt";
> data = lumiR(input_file, lib = 'lumiHumanV1')
Error in mget(targetID, get(paste(lib, "TARGETID2NUID", sep = ""),
mode = "environment"), :
invalid first argument
In addition: Warning message:
In formatC(as.numeric(id), width = width, flag = "0", format = "d") :
NAs introduced by coercion
I have recently used this exact command to successfully process a
different dataset. I compared the two input files, and they look more
or less the same to me (one dataset includes more types of columns,
but otherwise they appear the same). Thus I am at a loss to discover
why one file works and the other doesn't.
I have searched the mailing list archives and google, but cannot find
anyone with the same error for lumiR. I would greatly appreciate any
suggestions for overcoming this error.
Best regards,
Kristen Dang
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