error using lumiR
0
0
Entering edit mode
@kristen-k-dang-2922
Last seen 10.2 years ago
Hello, I am trying to use the lumiR function from the lumi package to read in a BeadStudio output file, but I keep getting the following error: > input_file = "sample_probe_profile.txt"; > data = lumiR(input_file, lib = 'lumiHumanV1') Error in mget(targetID, get(paste(lib, "TARGETID2NUID", sep = ""), mode = "environment"),  :   invalid first argument In addition: Warning message: In formatC(as.numeric(id), width = width, flag = "0", format = "d") :   NAs introduced by coercion I have recently used this exact command to successfully process a different dataset. I compared the two input files, and they look more or less the same to me (one dataset includes more types of columns, but otherwise they appear the same). Thus I am at a loss to discover why one file works and the other doesn't. I have searched the mailing list archives and google, but cannot find anyone with the same error for lumiR. I would greatly appreciate any suggestions for overcoming this error. Best regards, Kristen Dang [[alternative HTML version deleted]]
PROcess lumi PROcess lumi • 842 views
ADD COMMENT

Login before adding your answer.

Traffic: 846 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6