Hi Jixin, You are downloading data sets created by and for limmaGUI, not limma. In the limma users guide(Page 83 and 87 - limma 2.14.3-R-2.7.0), the weaver and Bob data files for limma are available from http://bioinf.wehi.edu.au/limma/data/ cheers, Keith Wang, Jixin wrote: > Dear All, > > I am now starting to do my microarray data analysis with limma. When I try to run the cases in chapter 11 of limma user?s guide, I can download Weaver mutant and Bob mutant data from http://bioinf.wehi.edu.au/limmaGUI/DataSets.html but can?t open them since they are lma extension files instead of zip files. Any suggestion would be greatly appreciated. Thank you very much. > > Best regards, > > > Jixin > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

Hi Keith, Thank you so much for your kind reply. I didn't read the manual carefully enough and had thought these two cases' data have the same download link as the former two. I really appreciate your kind help. Best regards, Jixin ----- Original Message ----- From: "Keith Satterley" <keith@wehi.edu.au> To: "Jixin Wang" <jixinwang at="" neo.tamu.edu=""> Cc: bioconductor at stat.math.ethz.ch Sent: Sunday, June 1, 2008 6:58:59 PM GMT -06:00 US/Canada Central Subject: Re: [BioC] Limma user?s guide example data sets Hi Jixin, You are downloading data sets created by and for limmaGUI, not limma. In the limma users guide(Page 83 and 87 - limma 2.14.3-R-2.7.0), the weaver and Bob data files for limma are available from http://bioinf.wehi.edu.au/limma/data/ cheers, Keith Wang, Jixin wrote: > Dear All, > > I am now starting to do my microarray data analysis with limma. When I try to run the cases in chapter 11 of limma user?s guide, I can download Weaver mutant and Bob mutant data from http://bioinf.wehi.edu.au/limmaGUI/DataSets.html but can?t open them since they are lma extension files instead of zip files. Any suggestion would be greatly appreciated. Thank you very much. > > Best regards, > > > Jixin > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor