Entering edit mode
Artur Veloso
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340
@artur-veloso-2062
Last seen 10.0 years ago
Hi all,
I'm having some issues trying to install the GOstats package. Does
anyone
have any idea what I could be doing wrong?
Thanks a lot!
Artur Veloso
> source("http://bioconductor.org/biocLite.R")
> biocLite("GOstats")
Running biocinstall version 2.2.9 with R version 2.7.0
Your version of R requires version 2.2 of BioConductor.
also installing the dependencies 'RBGL', 'Category'
trying URL '
http://bioconductor.org/packages/2.2/bioc/bin/windows/contrib/2.7/RBGL
_1.16.0.zip
'
Content type 'application/zip' length 1105523 bytes (1.1 Mb)
opened URL
downloaded 13 Kb
trying URL '
http://bioconductor.org/packages/2.2/bioc/bin/windows/contrib/2.7/Cate
gory_2.6.0.zip
'
Content type 'application/zip' length 678484 bytes (662 Kb)
opened URL
downloaded 662 Kb
trying URL '
http://bioconductor.org/packages/2.2/bioc/bin/windows/contrib/2.7/GOst
ats_2.6.0.zip
'
Content type 'application/zip' length 2824122 bytes (2.7 Mb)
opened URL
downloaded 899 Kb
Error in gzfile(file, "r") : cannot open the connection
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 13480 != reported length 1105523
2: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 921295 != reported length 2824122
3: In zip.unpack(pkg, tmpDir) : error 1 in extracting from zip file
4: In gzfile(file, "r") :
cannot open compressed file 'RBGL/DESCRIPTION', probable reason 'No
such
file or directory'
> sessionInfo()
R version 2.7.0 (2008-04-22)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.7.0
>
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