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Naira Naouar
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140
@naira-naouar-2394
Last seen 10.2 years ago
Hi,
I just found out that Mahong Dai proposed some tiling arrays custom
cdfs
that can be found here:
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF
_download_v10.asp
The way this CDFs were built is described in this paper:
http://nar.oxfordjournals.org/cgi/content/full/33/20/e175
Hope this will help.
Regards,
Naira
Yanqin Yang wrote:
> Hello,
>
> I have four CHIP-on-chip datasets on affymetrix mouse promoter
1.0 R array, which are duplicate for both target protein and control
group. By using makePlatformDesign and oligo packages, I have
successfully read in the *.cel files. Now, I am stuck for the next
step. Which package should I use for normalization and further
statistic analysis? This is my first time dealing with CHIP-chip
tiling array. Would anyone kindly help me out?
>
> Really appreciate your help!
>
> Yanqin
>
>
> ---------------------------------
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--
==================================================================
Naira Naouar
Tel:+32 (0)9 331 38 63
VIB Department of Plant Systems Biology, Ghent University
Technologiepark 927, 9052 Gent, BELGIUM
nanao at psb.ugent.be http://www.psb.ugent.be