The updated BioC 2.2 Windows binary packages, along with the source packages and Mac OS X binary packages, are now available from http://bioconductor.org/packages/2.2/bioc. You can obtain them, as usual, through the biocLite function when using R 2.7.0. Cheers, Patrick Martin Morgan wrote: > To follow up... > > Some spring cleaning in preparation for the release was a little too > effective. > > biocLite should now work for Linux and Mac packages; Windows packages > are in the process of being rebuilt. > > Thanks for alerting us to this problem. > > Martin > > Christian Kohler <christian.kohler at="" klinik.uni-regensburg.de=""> writes: > > >> Wolfgang Huber wrote: >> >>> 29/04/2008 16:59 Steve Lianoglou a ?crit >>> >>> >>>> Hi all, >>>> >>>> I'm fairly new to R and completely new to bioconductor. >>>> >>>> Just out of curiosity, is it safe/recommended to upgrade to the new R >>>> 2.7.0 release when it says on the bioconductor website that that "This >>>> [bioconductor] release is designed for R 2.6.1"? >>>> >>>> Thanks, >>>> -steve >>>> >>>> >>> Hi Steve, >>> >>> just don't try to carry over your installed packages from the 2.6.1 >>> installation to the 2.7 one - please install all packages from scratch >>> using biocLite (http://www.bioconductor.org/download), which >>> automatically takes care of release version synchronisation between R >>> and Bioconductor. >>> >>> Best wishes >>> Wolfgang >>> >>> ------------------------------------------------------------------ >>> Wolfgang Huber EBI/EMBL Cambridge UK http://www.ebi.ac.uk/huber >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >>> >> Dear all, >> >> just out of personal interest: is the following error due to the fact >> that Bioconductor 2.2 is not yet officially released? >> >> >>> source("http://www.bioconductor.org/biocLite.R") >>> biocLite("Biobase") >>> >> Running biocinstall version 2.2.7 with R version 2.7.0 >> Your version of R requires version 2.2 of BioConductor. >> Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, : >> argument 'lib' is missing: using 'XXX' >> Warning message: >> In install.packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, : >> package 'Biobase' is not available >> >> >>> sessionInfo() >>> >> R version 2.7.0 (2008-04-22) >> i686-pc-linux-gnu >> >> locale: >> C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> loaded via a namespace (and not attached): >> [1] tools_2.7.0 >> >> >> Best, >> Christian >> >> >> -- >> >> Christian Kohler >> Institute of Functional Genomics >> Computational Diagnostics >> University of Regensburg (BioPark I) >> D-93147 Regensburg (Germany) >> >> Tel. +49 941 943 5055 >> Fax +49 941 943 5020 >> christian.kohler at klinik.uni-regensburg.de >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > >