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If you want the topTable output, why don't you just output that? out <- topTable(fit2) write.table(out, "fit2.xls", row.names=FALSE, sep="\t") Best, Jim Ng Stanley wrote: > Hi, > > Using the two functions: > A) topTable(fit2, adjust.method="BH") > B) write.fit(fit2, file="fit2.xls", adjust = "BH") > > How can I generate the logFC and adjusted.p.values as seen in topTable, for > write.fit ? > Also, how can I make the precision in write.fit the same as topTable ? > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623