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Glynn, Earl
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170
@glynn-earl-952
Last seen 10.2 years ago
A researcher here would like to analyze data that is in the ABF format
in R
without using another tool (e.g. Origin Pro) to convert from ABF to a
TXT
file.
FWIW:
"The ABF file format has been used for many years by Axon Instruments
for
the pCLAMP electrophysiology data acquisition and analysis software."
"The AXON BINARY FILE format (ABF) was created for the storage of
binary
experimental data. It originated with the pCLAMP suite of data
acquisition
and analysis programs, but is also supported by AxoTape and AxoScope."
I haven't found any R/Bioconductor hits about ABF, but thought someone
might
know if anyone has already written code to read ABF files in R?
I have some documentation from Molecular Devices (they apparently
bought
Axon) about the ABF and ABF2 file formats, including an ABF2
Programmer's
Guide that was revised in Oct 2007, but didn't want to have this "fun"
if
someone else has already written R code for this.
efg
Earl F. Glynn
Scientific Programmer
Stowers Institute for Medical Research