Cool, thank you So I bagged 2.3.1 and Got up a big drive and Put up Leopard and Installed R-2.6-branch-leopard-universal.tar.gz and R --arch=ppc64 in the terminal now seems to work tho I have not done ReadAffy on 81 cels yet and affyQCReport How does one make R.app do R --arch=ppc64? Google for R.app ppc64 failed me This thread might be Mac not Bio but the goal is ReadAffy 81 cels so this is where it started Thank you -- Loren Engrav Univ Washington Seattle > From: Herve Pages <hpages at="" fhcrc.org=""> > Date: Tue, 11 Dec 2007 19:07:52 -0800 > To: Loren Engrav <engrav at="" u.washington.edu=""> > Cc: "bioconductor at stat.math.ethz.ch" <bioconductor at="" stat.math.ethz.ch=""> > Subject: Re: [BioC] Fwd: Wow, what have I done > > Hi Loren, > > Loren Engrav wrote: >> Thank you for trying to help, maybe I just do not get it >> >> I am using the page you list below and then going to experimental 64 builds >> from that page > > You don't need to follow this "Experimental 64-bit build of R" link (unless > you want > to try to build this 64-bit R yourself). The R builds for Leopard are right > there > on the page that people pointed to you, that is: > > http://r.research.att.com/ > > There are 4 different build flavors here: 2 for Tiger (for the i386 and ppc > archs > only) and 2 for Leopard (these are _full_ universal builds aka "quad builds" > i.e. > they were compiled for the 4 archs: i386, ppc, x86_64 and ppc64). > > Now install either > R-2.6-branch-leopard-universal.tar.gz > or > R-devel-leopard-universal.tar.gz > depending on which version of BioC you want to use: the former is for BioC 2.1 > (the > current release) and the latter for BioC 2.2 (the current devel). > > Then start R with --arch=x86_64 or --arch=ppc64 and you will be running in > 64-bit > mode. This is easy and should take you no more than 5-10 minutes. > >> >> There one finds one for Intel and one for PPC, both 10.4 (neither Leopard), >> Intel is 2.5.0 and PPC is 2.3.1 >> >> The monster package of R64 2.3.1 for PPC includes many Bio packages, but not >> affyQCReport > > AFAIK, no build of R has ever contained any BioC package. You will need to > install > them by following the very detailed instructions already given to you by > Kasper. > > H. > > >> >> >>> From: Sean Davis <sdavis2 at="" mail.nih.gov=""> >>> Date: Tue, 11 Dec 2007 19:48:57 -0500 >>> To: "bioconductor at stat.math.ethz.ch" <bioconductor at="" stat.math.ethz.ch=""> >>> Subject: [BioC] Fwd: Wow, what have I done >>> >>> Forgot to cc list on this one.... >>> >>> On Dec 11, 2007 7:02 PM, Loren Engrav <engrav at="" u.washington.edu=""> wrote: >>> >>>> Thank you >>>> I tried and failed, you are right, I am confused >>>> Am using R64 2.3.1 and the monster pack since it is available and I have >>>> not >>>> installed Leopard as yet >>>> But R64 2.3.1 monster does not include affyQCReport and I have failed at >>>> loading it into R64 2.3.1 inspite of your trying to help >>>> >>>> By the way, if I get Leopard up this weekend, where is an R64 for Leopard >>>> with affyQCReport and affy? >>>> >>> Hi, Loren. >>> >>> R does not include any bioconductor packages--those need to be added after >>> installing R. >>> >>> You will need to install 64-bit R that goes with leopard. I believe a link >>> was included earlier, but here it is: http://r.research.att.com/ . >>> >>> Then, you will need to follow the instructions for using biocLite that Herve >>> Pages sent (if I recall who sent it correctly). >>> >>> Sean >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >