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Glazko, Galina wrote: > Dear list, > > > > I have Affy SNP v.5.0 data and I need to do copy number variation > analysis. > > This type of analysis is new for me and I would greatly appreciate if > someone can share experience... > > > > - Is there Bioconductor package for Affy SNP v.5.0 chip? Theoretically the oligo package. However you would need a pd.package for this chip, and none AFAIK exists right now. You might take a look at aroma.affymetrix, which is supposed to handle this chip type. Best, Jim > > - Is there a package to do vcn analysis? > > > > Thank you! > > Best regards > > Galina > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623