Hi Robert, Thanks for your quick answer. The problem is that Rgraphviz sets in fact a new method to the generic function 'imageMap' from geneplotter, that accept an Ragraph object (and not a matrix with boxplot coordinates) as the first argument . Regards Ariel./ On Nov 26, 2007 1:32 PM, Robert Gentleman <rgentlem at="" fhcrc.org=""> wrote: > Hi, > > FYI in R and BioC you will know if a function is deprecated or not by > the error/warning you get when you try to use it, and typically such a > warning will be present for about six months before the function is made > defunct. In this case no such deprecation has happened. > > imageMap is in the geneplotter package. > > best wishes > Robert > > > > Ariel Chernomoretz wrote: > > Hi BioC's and Rgraphviz maintainers, > > > > I have recently installed BioC 2.1 on R 2.6 and I found that the > > imageMap function is not included anymore in > > Rgraphviz 1.16. > > I found that function real handy to produce visual reports of GO > > overrepresentation analysis performed mainly with GOstats. > > (As a matter of fact I was in the process of cleaning the code in > > order to submit a new bioc tool intended to produce > > fancy html reports) > > > > Is there any chance to reconsider including the imageMap functionality > > again in Rgraphviz? > > Thanks > > Ariel./ > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > -- > Robert Gentleman, PhD > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M2-B876 > PO Box 19024 > Seattle, Washington 98109-1024 > 206-667-7700 > rgentlem at fhcrc.org >