I have been trying to us goTools (but any other package would be fine) to produce gene category pie charts for arabidopsis genes. My gene lists are in the format AT3G12345 etc. but most of these could be mapped to GeneChip probesets if that would help. Naomi S. Altman 814-865-3791 (voice) Associate Professor Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111

Thanks, Naomi At 12:35 PM 10/13/2007, you wrote: >Naomi, > >The GOHyperGAll_Subset() and pie() steps on this page generate GO_Slim-type >pie charts for Arabidopsis gene ids (AT3G12345): >http://faculty.ucr.edu/~tgirke/Documents/R_BioCond/R_BioCondManual.ht ml#GOHyperGAll > >Thomas > >On Fri 10/12/07 23:55, Naomi Altman wrote: > > I have been trying to us goTools (but any other package would be > > fine) to produce gene category pie charts for arabidopsis genes. My > > gene lists are in the format AT3G12345 etc. but most of these could > > be mapped to GeneChip probesets if that would help. > > > > Naomi S. Altman 814-865-3791 (voice) > > Associate Professor > > Dept. of Statistics 814-863-7114 (fax) > > Penn State University 814-865-1348 (Statistics) > > University Park, PA 16802-2111 > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > >-- >Thomas Girke >Assistant Professor of Bioinformatics >Director, IIGB Bioinformatic Facility >Center for Plant Cell Biology (CEPCEB) >Institute for Integrative Genome Biology (IIGB) >Department of Botany and Plant Sciences >1008 Noel T. Keen Hall >University of California >Riverside, CA 92521 > >E-mail: thomas.girke at ucr.edu >Website: http://faculty.ucr.edu/~tgirke >Ph: 951-827-2469 >Fax: 951-827-4437 Naomi S. Altman 814-865-3791 (voice) Associate Professor Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111