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Groot, Philip de
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630
@groot-philip-de-1307
Last seen 10.1 years ago
Hello list,
I encountered the following problem while trying to install the latest
bioconductor 2.1 release: both biocLite() and getBioC() detect that
the latest R-release 2.6.0 is a development version (which is NOT the
case; I double checked it!). As a result, bioconductor development
libraries are being installed, which will fail due to dependency
problems (wrong versions of the different required libraries etc).
Please fix this!
Regards,
Dr Philip de Groot
Wageningen University
Screendump:
R version 2.6.0 (2007-10-03)
Copyright (C) 2007 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> source("http://bioconductor.org/biocLite.R")
> biocLite()
Running biocinstall version 2.1.7 with R version 2.6.0 (under
development)
Your version of R requires version 2.1 of Bioconductor.
Will install the following packages:
[1] "affy" "affydata" "affyPLM" "annaffy"
"annotate"
[6] "Biobase" "Biostrings" "DynDoc" "gcrma"
"genefilter"
[11] "geneplotter" "hgu95av2" "limma" "marray"
"matchprobes"
[16] "multtest" "ROC" "vsn" "xtable"
"affyQCReport"
Please wait...
> sessionInfo()
R version 2.6.0 (2007-10-03)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US
.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.
UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8
;LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] rcompgen_0.1-15 tools_2.6.0