processCGH in snapCGH package
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@wang-jianmin-2415
Last seen 10.2 years ago
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J-C. Marioni ▴ 30
@j-c-marioni-1339
Last seen 10.2 years ago
Hi Jianmin, Thanks for this information - I haven?t used this function for a while and hadn?t realised there was an error. I will have a look at this next week and commit a change to Bioconductor. Thanks, John John >Hello, John, > >I read your post on BioC mialing list and I don't have an account >there. So I have similar problem to process agilent 244k arrays. And >after check the code, I found that readPositionInfo() has something >missing: the Position information. So what I have done to fix the >problem is as follows: > >RG2$genes$Position = (RG2$genes$Start + RG2$genes$End)/2 > >before backgroundCorrection. > >Hope it helps. > >Best Regards, > >Jianmin Wang > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor
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