Hi Peter, affylmGUI version 1.11.6 now does what you request. At least it uses the parameters that were last used in the TopTable creation process and uses those when it writes the HTML Report. It is currently only available from Bioc-devel. It will be available with R2.6.0 and Bioconductor 2.1 which is planned to be released on October 5. cheers, Keith ======================== Keith Satterley Bioinformatics Division The Walter and Eliza Hall Institute of Medical Research ======================= Keith Satterley wrote: > Hi Peter, > > I'll look into this next week. I haven't looked at this section for a long > while. I'm busy on a couple of posters at the moment. I'll check it out next > week and see if I can have it working for the new release of Bioconductor in > early October. I'll let you know when it is in the devel release of Bioc, > > cheers, > > Keith > > ======================== > Keith Satterley > Bioinformatics Division > The Walter and Eliza Hall Institute of Medical Research > Parkville, Melbourne, > Victoria, Australia > ======================= > > Peter Andrews wrote: >> Hello, >> >> When creating a Top Table (of differentially expressed genes) in >> affylmGUI there is a dialog with options for correction method, >> statistic to sort by, etcetera. >> >> No such dialog is presented when using 'Export HTML Report'. >> >> Is there a way to set these options for the html report? >> >> Thank you, >> >> Peter Andrews >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor