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Janet Young
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740
@janet-young-2360
Last seen 5.3 years ago
Fred Hutchinson Cancer Research Center,…
Hi,
I'm trying to find chromosomal co-ordinates for the hgu95a array
probes in the May 2004 version of the human genome assembly (also
known as hg17, and build 35).
It looks like the co-ordinates in the bioconductor package refer to
the July 2003 (= hg16, build34) assembly (is that right?), and I can
get co-ordinates from the Affy website on the March 2006 (=hg18,
build 36.1) assembly.
I can think of various complicated and imperfect ways to rederive the
co-ordinates for the May 2004 assembly, but it seems to me the
mapping I want is probably out there somewhere already. Any ideas?
thanks in advance,
Janet Young
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Dr. Janet Young
Trask lab
Fred Hutchinson Cancer Research Center
1100 Fairview Avenue N., C3-168,
P.O. Box 19024, Seattle, WA 98109-1024, USA.
tel: (206) 667 1471 fax: (206) 667 6524
http://www.fhcrc.org/labs/trask/