hexbin package installation probs
1
0
Entering edit mode
@jhs1jjmleedsacuk-2338
Last seen 10.2 years ago
Hi, I'm using R 2.5.0 on openSUSE 10.2 x86_64 with biocLite packages. I'm wanted to use the arrayQuality package with some agilent data. I'm unable to install the hexbin package which is a dependency with the following: lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL /home/ lxuser/hexbin_1.10.0.tar.gz * Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5' * Installing *source* package 'hexbin' ... ** libs gfortran -fpic -c hbin.f -o hbin.o make: gfortran: Command not found make: *** [hbin.o] Error 127 ERROR: compilation failed for package 'hexbin' ** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5/hexbin' lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL /home/lxuser/hexbin_1.10.0.tar.gz * Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5' * Installing *source* package 'hexbin' ... ** libs gfortran -fpic -c hbin.f -o hbin.o make: gfortran: Command not found make: *** [hbin.o] Error 127 ERROR: compilation failed for package 'hexbin' ** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5/hexbin' I have the gcc compiler installed according to YAST. Thanks John
hexbin arrayQuality hexbin arrayQuality • 1.9k views
ADD COMMENT
0
Entering edit mode
@james-w-macdonald-5106
Last seen 2 days ago
United States
Hi John, jhs1jjm at leeds.ac.uk wrote: > Hi, I'm using R 2.5.0 on openSUSE 10.2 x86_64 with biocLite packages. I'm wanted > to use the arrayQuality package with some agilent data. I'm unable to install > the hexbin package which is a dependency with the following: > > lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL /home/ > > lxuser/hexbin_1.10.0.tar.gz > * Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5' > * Installing *source* package 'hexbin' ... > ** libs > gfortran -fpic -c hbin.f -o hbin.o > make: gfortran: Command not found > make: *** [hbin.o] Error 127 > ERROR: compilation failed for package 'hexbin' > ** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5/hexbin' > lxuser at linux-4j12:~/R/x86_64-unknown-linux-gnu-library/2.5> R CMD INSTALL > /home/lxuser/hexbin_1.10.0.tar.gz * > Installing to library '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5' > * Installing *source* package 'hexbin' ... > ** libs > gfortran -fpic -c hbin.f -o hbin.o > make: gfortran: Command not found > make: *** [hbin.o] Error 127 > ERROR: compilation failed for package 'hexbin' > ** Removing '/home/lxuser/R/x86_64-unknown-linux-gnu- library/2.5/hexbin' > > I have the gcc compiler installed according to YAST. Yes, but gcc isn't gfortran, which is the error you are seeing. Installing gfortran would be the first step here. Best, Jim > > Thanks > John > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623
ADD COMMENT
0
Entering edit mode
John: To add to Jim's comments, you will have to install gfortran from one of the internet repositories for SuSE as gfortran does not come on the downloadable CDs. As I have not purchased a packaged copy of SuSE in a while and only used the downloadable install CDs, I do not know if gfortran is on the commercial CDs. Good Luck!! Dave H -- David A. Henderson, Ph.D. Research Scientist Insightful Corporation 1700 Westlake Avenue North, Suite 500 Seattle, WA 98109-3044 Tel: 206-802-2307 Fax: 206-283-8691 DNADave at Insightful.Com http://www.insightful.com
ADD REPLY

Login before adding your answer.

Traffic: 624 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6