Sorry, see ?lumiR for help On Fri, 3 Aug 2007, Cei Abreu-Goodger wrote: > > Dear Leila, > > The data() command is for loading data sets that are packaged with other > programs. What you want to be using is something like: > > rawLumi <- lumiR('Leila_90samples_...._geneprofile.txt', ...) > > see ?rawLumi for help > > Cei > > > On Fri, 3 Aug 2007, L.N. Laredj wrote: > >> Dear Sir/Madam, >> >> I have just been given my input raw data for my array exp using the >> Illumina platform. I see that the example data file on the lumi programme >> is an RDA file - I was able to run and understand the commands for >> background correction and normalisation fine, but I am still unable to make >> the programme read my input data - provided in a text format. Example: When >> typing: >data('Leila_90samples_...._geneprofile.txt') I get a warning >> message that the data could not be found. >> >> I realise this is a trivial problem but I would really appreciate if you >> could help me clarify it. >> >> Looking forward to hearing from you >> >> Best regards, >> Leila >> >> -- >> Leila N Laredj >> PhD Candidate >> Department of Pathology >> University of Cambridge >> Tel. (01223) 333735 >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

Thank you so much for your help! Best regards, Leila On Aug 3 2007, Cei Abreu-Goodger wrote: > >Dear Leila, > >The data() command is for loading data sets that are packaged with other >programs. What you want to be using is something like: > >rawLumi <- lumiR('Leila_90samples_...._geneprofile.txt', ...) > >see ?rawLumi for help > >Cei > > >On Fri, 3 Aug 2007, L.N. Laredj wrote: > >> Dear Sir/Madam, >> >> I have just been given my input raw data for my array exp using the >> Illumina platform. I see that the example data file on the lumi >> programme is an RDA file - I was able to run and understand the commands >> for background correction and normalisation fine, but I am still unable >> to make the programme read my input data - provided in a text format. >> Example: When typing: >data('Leila_90samples_...._geneprofile.txt') I >> get a warning message that the data could not be found. >> >> I realise this is a trivial problem but I would really appreciate if you >> could help me clarify it. >> >> Looking forward to hearing from you >> >> Best regards, >> Leila >> >> -- >> Leila N Laredj >> PhD Candidate >> Department of Pathology >> University of Cambridge >> Tel. (01223) 333735 >> >> _______________________________________________ Bioconductor mailing >> list Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > > -- Leila N Laredj PhD Candidate Department of Pathology University of Cambridge Tel. (01223) 333735