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Shripad Sinari
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@shripad-sinari-2285
Last seen 10.2 years ago
Hi,
I get the following error when running gpQuality
> gpQuality()
[1] "Starting gpQuality..."
Error in if (skip > 0) readLines(file, skip) :
missing value where TRUE/FALSE needed
In addition: Warning messages:
1: input string 30 is invalid in this locale in: grep(pattern, x,
ignore.case, extended, value, fixed, useBytes)
2: input string 30 is invalid in this locale in: grep(pattern, x,
ignore.case, extended, value, fixed, useBytes)
The following is package description on my machine:
> packageDescription("arrayQuality")
Package: arrayQuality
Version: 1.12.0
Date: 2007-04-19
Title: Assessing array quality on spotted arrays
Depends: R (>= 2.2.0), marray, limma, convert, hexbin, gridBase,
RColorBrewer
biocViews: Microarray,TwoChannel,QualityControl,Visualization
Suggests: mclust, MEEBOdata, HEEBOdata
Author: Agnes Paquet and Jean Yee Hwa Yang <yeehwa at="" stat.berkeley.edu="">
Maintainer: Agnes Paquet <paquetagnes at="" yahoo.com="">
Description: Functions for performing print-run and array level
quality
assessment.
License: LGPL
URL: http://arrays.ucsf.edu/
Packaged: Wed Apr 25 01:56:01 2007; biocbuild
Built: R 2.5.0; ; 2007-07-06 13:04:04; unix
I have faced the same error with agQuality but not with maQualityPlots
functions. I suspect this is file reading error.
Thanks for the help,
--
Shripad Sinari
Computer Database Specialist
Bioinformatics Shared Service
Arizona Cancer Center
Tucson, Arizona, 85725-5024