displayTIFFImage funtion in beadarray package
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@sebastien-gerega-2271
Last seen 10.2 years ago
Hi, I am trying to use the displayTIFFImage function but keep getting the error: Error: could not find function "displayTIFFImage" even though I have the beadarray library installed and loaded and ?displayTIFFImage provides me with information on the function. Can this function be used? If so how can i access it? thanks, Sebastien
beadarray beadarray • 1.1k views
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Jarno Tuimala ▴ 140
@jarno-tuimala-1650
Last seen 10.2 years ago
Hi! It would seem that the function displayTIFFImage has not been exported from the namespace of beadarray. But, you can still access the function by using the notation: beadarray:::displayTIFFImage() Regards, Jarno On Thu, 12 Jul 2007, Sebastien Gerega wrote: > Hi, > I am trying to use the displayTIFFImage function but keep getting the error: > Error: could not find function "displayTIFFImage" > even though I have the beadarray library installed and loaded and > ?displayTIFFImage provides me with information on the function. > Can this function be used? If so how can i access it? > thanks, > Sebastien > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > ---------------------------------------------------------------------- ------- Jarno Tuimala, FT, bioinformatiikan asiantuntija, CSC, PL 405, 02101 Espoo puh.: (09) 457 2226, fax: (09) 457 2302, s-posti: jarno.tuimala at csc.fi CSC on tieteen tietotekniikan keskus, http://www.csc.fi/molbio Jarno Tuimala, PhD, bioinformatics, CSC, P.O.Box 405, FI-02101 Espoo, Finland tel.: +358 9 457 2226, fax: +358 9 457 2302, e-mail: jarno.tuimala at csc.fi CSC is the Finnish IT Center for Science, http://www.csc.fi/molbio
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Matt Ritchie ▴ 460
@matt-ritchie-2048
Last seen 10.2 years ago
Hi Sebastien, The function displayTIFFImage() is no longer in use, and won't work even if you can access it. I'll delete it properly from the developmental version of the package when I next do an update. Apologies for the confusion. Best wishes, Matt > Hi, > I am trying to use the displayTIFFImage function but keep getting the error: > Error: could not find function "displayTIFFImage" > even though I have the beadarray library installed and loaded and > ?displayTIFFImage provides me with information on the function. > Can this function be used? If so how can i access it? > thanks, > Sebastien
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Thanks Matt, why is the displayTIFFImage() function no longer in use? Will it be replaced by something else or has that functionality been phased out? thanks, Sebastien Matt Ritchie wrote: > Hi Sebastien, > > The function displayTIFFImage() is no longer in use, and won't work even if > you can access it. I'll delete it properly from the developmental version > of the package when I next do an update. Apologies for the confusion. > > Best wishes, > > Matt > > >> Hi, >> I am trying to use the displayTIFFImage function but keep getting the error: >> Error: could not find function "displayTIFFImage" >> even though I have the beadarray library installed and loaded and >> ?displayTIFFImage provides me with information on the function. >> Can this function be used? If so how can i access it? >> thanks, >> Sebastien >> > > >
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Hi Sebastien, I use imageplot() to look for spatial artefacts on the array surface in place of displayTiffImage(). We recently changed the way raw bead level data is stored and read into R, and while most functions were easy to update to handle the new structure, updating displayTIFFImage() was less trivial. As we hadn't been using it, it was removed from the package. If people are keen to have it back, let me know and we can try harder to update it. Best wishes, Matt > Thanks Matt, > why is the displayTIFFImage() function no longer in use? Will it be > replaced by something else or has that functionality been phased out? > thanks, > Sebastien > > Matt Ritchie wrote: >> Hi Sebastien, >> >> The function displayTIFFImage() is no longer in use, and won't work even if >> you can access it. I'll delete it properly from the developmental version >> of the package when I next do an update. Apologies for the confusion. >> >> Best wishes, >> >> Matt >> >>> Hi, >>> I am trying to use the displayTIFFImage function but keep getting the error: >>> Error: could not find function "displayTIFFImage" >>> even though I have the beadarray library installed and loaded and >>> ?displayTIFFImage provides me with information on the function. >>> Can this function be used? If so how can i access it? >>> thanks, >>> Sebastien
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