displaying heatmap with gene names instead of Affy probes
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@ruppert-valentino-1376
Last seen 10.3 years ago
Hello, Can anyone tell me how to display heatmap with gene names instead of Affy probes when displaying heatmap from Affy exprsSet. I looked at the heatmap function and exprs class but I am at a loss as how to change the name on the heatmap to Gene name instead of Affy ID. I managed to get the geneids as follows : geneid <- mget(geneNames(eset), envir = hgu133aSYMBOL) # get gene symbols but would be greatful for any advice on what to do next to get heatmap with gene names instead of Affy IDs. Many thanks Ruppert.
affy affy • 1.7k views
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@sean-davis-490
Last seen 4 months ago
United States
Ruppert Valentino wrote: > Hello, > Can anyone tell me how to display heatmap with gene names instead > of Affy probes when displaying heatmap from Affy exprsSet. I looked at the > heatmap function and exprs class but I am at a loss as how to change the > name on the heatmap to Gene name instead of Affy ID. > > I managed to get the geneids as follows : > > geneid <- mget(geneNames(eset), envir = hgu133aSYMBOL) # get gene symbols > > > but would be greatful for any advice on what to do next to get heatmap with > gene names instead of Affy IDs. > You probably want to look at the help for heatmap. There is an argument to the heatmap function called labRow which can be used for this purpose. Sean
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