Entering edit mode
To affylmGUI users,
I have sent version 1.10.4 of affylmGUI to the current release of
Bioconductor.
There were three small changes as follows:
1. References to Digestion changed to Degradation. Changed Menu Item
name and
function names. See Bioconductor emails from Gordon Smyth/Robert
Gentleman
around December 6th. 2006 confirming this choice of words.
2. Fixed a bug in Normalize.R introduced in 1.10.1 - bracket misplaced
as shown
below:
Replaced this line
Try(write.table(NormalizedAffyData.exprs),file=FileName,sep="\t",quote
=FALSE,col.names=NA)
with
Try(write.table(NormalizedAffyData.exprs,file=FileName,sep="\t",quote=
FALSE,col.names=NA))
3. Error on console when HTML report was to be created. It read:
"Error in get(x, envir, mode, inherits) : variable "HTMLenv" was
not found"
Modify htmlreport.R
replace:
try(assign(".HTML.graph", TRUE, env = get("HTMLenv", envir =
.GlobalEnv)))
with:
if (exists("HTMLenv",where=".GlobalEnv",mode="environment")){
try(assign(".HTML.graph", TRUE, env = get("HTMLenv", envir =
.GlobalEnv)))
}#end of if
(exists("HTMLenv",where=".GlobalEnv",mode="environment"))
I shall update tomorrow the Bioc-devel version (1.11.4) to be the same
as 1.10.4
on the release version.
cheers,
Keith