R memory overflow in my server
1
0
Entering edit mode
@denrique-escobar-espinoza-1303
Last seen 10.2 years ago
Hi, I was doing QC of ~200 hgu-133a chip, but it runs out of memory, I used the lowest priority with nice, is there another trick to use in linux (excluding ulimit that kill process)? Here they are the spec of my server (2 processors) vendor_id : AuthenticAMD cpu family : 15 model : 5 model name : AMD Opteron(tm) Processor 248 stepping : 10 cpu MHz : 2190.480 cache size : 1024 KB fpu : yes fpu_exception : yes cpuid level : 1 flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 syscall nx mmxext lm 3dnowext 3dnow bogomips : 4384.18 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 address sizes : 40 bits physical, 48 bits virtual power management: ts fid vid ttp ______________________________________________________________________ ______________Yahoo! oneSearch: Finally, mobile search that gives answers, not web links.
• 935 views
ADD COMMENT
0
Entering edit mode
Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 10.2 years ago
"D.Enrique ESCOBAR ESPINOZA" <escobarebio at="" yahoo.com=""> writes: > Hi, > I was doing QC of ~200 hgu-133a chip, > but it runs out of memory, > > I used the lowest priority with nice, is there another trick to use > in linux (excluding ulimit that kill process)? Yes, you can use a web browser to find a website to order more RAM ;-) nice has to do with scheduling priority on the CPU, not with memory use. You've given us details on your CPU, but I think the output of free will tell you how much RAM is installed on the system and that is the critical issue here. + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org
ADD COMMENT

Login before adding your answer.

Traffic: 655 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6