Problems accessing the Milan package through the vignettes Explorer
1
0
Entering edit mode
@fatima-nunez-300
Last seen 10.3 years ago
Hello all, I am currently trying to install the Milan BioC course info and packages and I seem to be having a problem when trying to access the Milan package through the vignettes Explorer. Installation has been done with no error messages as instructed by the http://www.bioconductor.org/workshops/Milan/milan.html page. Also as instructed I type: > library(tkWidgets) Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, simply type: openVignette() For details on reading vignettes, see the openVignette help page. Creating a new generic function for "summary" in package reposTools Synching your local package management information ... Loading required package: widgetTools > library(Milan) > vExplorer() Loading required package: tools Loading required package: DynDoc <tcl> The problem arises when I the vignettes Explorer opens. The only packages that appear in the list are the following: affy, affycomp, affydata, AnnBuilder, annotate, Biobase, edd, genefilter, geneplotter, graph, hexbin, makecdfenv, marrayClasses, marrayInput, marrayNorm, marrayPlots, marrayTools, multtest, reposTools, ROC, SAGElyzer, tkWidgets, vsn and widgetTools and Milan is nowhere to be seen! Any ideas/suggestions? Am I doing something wrong? Has anybody else encountered this problem? Many thanks, F?tima _______ F?tima N??ez, PhD Centre for Cancer Research (CIC) University of Salamanca-CSIC Campus Unamuno 37007 Salamanca?????????????????????????????????????????????????? Spain Phone: + 34 923 294802 Fax:?????+ 34 923 294743 E-mail: fnunez@usal.es
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin • 1.3k views
ADD COMMENT
0
Entering edit mode
John Zhang ★ 2.9k
@john-zhang-6
Last seen 10.3 years ago
After downloading the package, you have to install the package as you do with any R packages before using vExplorer. Have you done that? >From: F?tima N??ez <fnunez@usal.es> >To: <bioconductor@stat.math.ethz.ch> >Date: Thu, 12 Jun 2003 13:46:30 +0200 >MIME-Version: 1.0 >X-Priority: 3 (Normal) >X-MSMail-Priority: Normal >X-MIMEOLE: Produced By Microsoft MimeOLE V6.00.2800.1165 >Importance: Normal >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >Content-Transfer-Encoding: 8bit >X-MIME-Autoconverted: from quoted-printable to 8bit by stat.math.ethz.ch id h5CBokDF029297 >X-Spam-Status: No, hits=0.0 required=5.0 tests=none version=2.54 >X-Spam-Level: >X-Spam-Checker-Version: SpamAssassin 2.54 (1.174.2.17-2003-05-11-exp) >Cc: >Subject: [BioC] Problems accessing the Milan package through the vignettes Explorer >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.2 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Subscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe> >List-Archive: <https: www.stat.math.ethz.ch="" pipermail="" bioconductor=""> >List-Unsubscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe> > >Hello all, > >I am currently trying to install the Milan BioC course info and packages >and I seem to be having a problem when trying to access the Milan >package through the vignettes Explorer. Installation has been done with >no error messages as instructed by the >http://www.bioconductor.org/workshops/Milan/milan.html page. > >Also as instructed I type: > >> library(tkWidgets) >Loading required package: Biobase >Welcome to Bioconductor > Vignettes contain introductory material. To view, > simply type: openVignette() > For details on reading vignettes, see > the openVignette help page. >Creating a new generic function for "summary" in package >reposTools > >Synching your local package management information ... >Loading required package: widgetTools >> library(Milan) >> vExplorer() >Loading required package: tools >Loading required package: DynDoc ><tcl> > >The problem arises when I the vignettes Explorer opens. The only >packages that appear in the list are the following: > > >affy, affycomp, affydata, AnnBuilder, annotate, Biobase, edd, >genefilter, geneplotter, graph, hexbin, makecdfenv, marrayClasses, >marrayInput, marrayNorm, marrayPlots, marrayTools, multtest, reposTools, >ROC, SAGElyzer, tkWidgets, vsn and widgetTools > > >and Milan is nowhere to be seen! > > >Any ideas/suggestions? Am I doing something wrong? Has anybody else >encountered this problem? > >Many thanks, > >F?tima > >_______ >F?tima N??ez, PhD >Centre for Cancer Research (CIC) >University of Salamanca-CSIC >Campus Unamuno >37007 Salamanca?????????????????????????????????????????????????? >Spain >Phone: + 34 923 294802 >Fax:?????+ 34 923 294743 >E-mail: fnunez@usal.es > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
ADD COMMENT

Login before adding your answer.

Traffic: 773 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6