Entering edit mode
Dick Beyer
★
1.4k
@dick-beyer-26
Last seen 10.2 years ago
Has anyone done the complete install of the mysql Ensembl databases
that are used by the exonmap package? The sizes of some of the
database dumps at ftp://ftp.ensembl.org/pub/ are pretty daunting.
I am using the affy mouse exon arrays and wondered if, initially at
least, I could just install some smaller portion of all the
recommended data in order to do a gene core analysis? That is, could
I just install, say, the files from:
ftp://ftp.ensembl.org/pub/current_mus_musculus/data/mysql/mus_musculus
_core_43_36d
rather than of the files from current_mus_musculus? And could I delay
installing the "Multi-species data" and the "BioMart data"? Or do the
commands I would use to get a core gene list from the exon CEL files
need to access all those database tables?
Thanks much,
Dick
**********************************************************************
*********
Richard P. Beyer, Ph.D. University of Washington
Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100
Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
http://staff.washington.edu/~dbeyer