Most of the documentation should be available under 'Documentations' on www.bioconductor.org. Since Bioconductor is based on R, it would also be helpful to learn some R basics and its documentation should appear on http://www.r-project.org. Some very good books/articles are also available for R, details under 'publications'. I would also recommend learning to use ESS with Emacs. You can execute single or block of lines from a script file to a the R process. There will be some initial effort of setting it up ESS to work with Emacs (http://stat.ethz.ch/ESS/Manual/ and http://www.sciviews.org/_rgui/). And you may need as few as 10 commands to begin using Emacs efficiently. But in the long run it really worth the effort. Regards, Adai. -----Original Message----- From: Tapan Mehta [mailto:tapmehta@yahoo.com] Sent: Saturday, June 07, 2003 3:07 PM To: John Zhang; bioconductor@stat.math.ethz.ch Subject: [BioC] Bioconductor commands in Unix online documentation request Thank you all for the help. It would be nice if I could know about some documentation for R/bioconductor commands that can be used in Unix through command line. Thanks once again, Tapan Mehta