I have create a 'real' R package from John Storey's code. Let me know if you want a copy. -Greg > -----Original Message----- > From: Jane Fridlyand [mailto:janef@stat.berkeley.edu] > Sent: Wednesday, June 04, 2003 2:48 PM > To: bioconductor@stat.math.ethz.ch > Subject: [BioC] SAM in R and normalization question > > > > > Hi, > > I just recently saw R-function to compute Q-values given unadjusted > p-values on John Storey web page: > > http://www.stat.berkeley.edu/~storey/qvalue/index.html > > I have not tried it myself. > > LEGAL NOTICE\ Unless expressly stated otherwise, this message is... {{dropped}}

I've been debating about whether to contribute it to Bioconductor or to CRAN. What are the pros and cons of each? As I see it, the q-value code is more general than gene expression, etc, so it makes some sense to put it on CRAN. (Why do we have two different package repositories anyway?) -G > -----Original Message----- > From: Rafael A. Irizarry [mailto:ririzarr@jhsph.edu] > Sent: Wednesday, June 04, 2003 4:32 PM > To: Warnes, Gregory R > Subject: RE: [BioC] Q-values [was: SAM in R and normalization > question] > > > how about contributing it to bioconductor? > > On Wed, 4 Jun 2003, Warnes, > Gregory R wrote: > > > > > I have create a 'real' R package from John Storey's code. > Let me know if > > you want a copy. > > > > -Greg > > > > > > > -----Original Message----- > > > From: Jane Fridlyand [mailto:janef@stat.berkeley.edu] > > > Sent: Wednesday, June 04, 2003 2:48 PM > > > To: bioconductor@stat.math.ethz.ch > > > Subject: [BioC] SAM in R and normalization question > > > > > > > > > > > > > > > Hi, > > > > > > I just recently saw R-function to compute Q-values given > unadjusted > > > p-values on John Storey web page: > > > > > > http://www.stat.berkeley.edu/~storey/qvalue/index.html > > > > > > I have not tried it myself. > > > > > > > > > > > > LEGAL NOTICE\ Unless expressly stated otherwise, this > message is... {{dropped}} > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > > LEGAL NOTICE\ Unless expressly stated otherwise, this message is... {{dropped}}