subset of RG - limma
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João Fadista ▴ 500
@joao-fadista-1942
Last seen 10.2 years ago
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@michael-watson-iah-c-378
Last seen 10.2 years ago
Hi RG$weights is a matrix of values, as is RG$R, RG$G etc etc With RG[RG$weights>0.1,] You are filtering RG by it's rows, using a whole matrix to subset it! If you want to subset on the first column of weights, try: RG[RG$weights[,1]>0.1,] Mick -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor- bounces@stat.math.ethz.ch] On Behalf Of Jo?o Fadista Sent: 22 December 2006 09:30 To: bioconductor at stat.math.ethz.ch Subject: [BioC] subset of RG - limma Dear all, I would like to know how can I take out from my RGList all the rows where RG$weights<= 0.1 I tried this but it doesn?t work: > RG[RG$weights>0.1,] Error in `[.RGList`(RG, RG$weights > 0.1, ) : (subscript) logical subscript too long Best regards Jo?o Fadista Ph.d. student Danish Institute of Agricultural Sciences Research Centre Foulum Dept. of Genetics and Biotechnology Blichers All? 20, P.O. BOX 50 DK-8830 Tjele Phone: +45 8999 1900 Direct: +45 8999 8999 E-mail: Joao.Fadista at agrsci.dk <mailto:joao.fadista at="" agrsci.dk=""> Web: www.agrsci.org <http: www.agrsci.org=""/> ________________________________ News and news media <http: www.agrsci.org="" navigation="" nyheder_og_presse=""> . This email may contain information that is confidential. Any use or publication of this email without written permission from DIAS is not allowed. If you are not the intended recipient, please notify DIAS immediately and delete this email. [[alternative HTML version deleted]]
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