On Friday 15 December 2006 05:43, Jo??o Fadista wrote:
> Dear all,
>
> I have made a microarray experiment with some EST?s (expression
sequence
> tags) and I would like to see if those EST?s are in a known region
of
> structural variation in the human genome.
>
> So I was wondering if anyone knows if there is any R/BioC package or
other
> software where I can input all my EST?s ( their sequence in FASTA
format
> or their positions in the genome) and then retrieve an output file
with
> those that are mapped to a known region of structural variation.
As far as I know there are no bioconductor packages for doing this.
You may
want to look at using the UCSC table browser for doing a task like
this. I
think it will be possible. You can write to them (there is a link on
their
site) for assistance--they are quite helpful and prompt.
Sean
