environment variable or system variable for BioC version
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@denrique-escobar-espinoza-1303
Last seen 10.2 years ago
is there a way to find wich bioconductor version I m using in my server like: R.Version() or R.version.string or getRversion() ? thanks
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 10.2 years ago
"D.Enrique ESCOBAR ESPINOZA" <escobarebio at="" yahoo.com=""> writes: > is there a way to find wich bioconductor version I m using in my > server like: > R.Version() > or > R.version.string > or > getRversion() > ? At present, no. Bioconductor releases are matched to R releases: R BioC 2.2.x 1.7 2.3.x 1.8 2.4.x 1.9 But that relies upon the user installing BioC packages in the recommended fashion. It is possible to have a mix (it is not recommended and packages may not work). You can determine the versions of BioC packages you have by loading the packages in an R session using library() and then calling sessionInfo(). You can compare the version numbers to those posted in the BioC release repositories (there are code-based ways to retrieve this same info, see available.packages): http://www.bioconductor.org/packages/1.8/bioc/ http://www.bioconductor.org/packages/1.9/bioc/ (current release) Best Wishes, + seth
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lidaof ▴ 450
@lidaof-1917
Last seen 10.0 years ago
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lidaof ▴ 450
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