Question

help with library(NBIR)

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Olivier Martin ▴ 10

@olivier-martin-8

Last seen 10.2 years ago

--------------EC7355746203A2B4FADEEE3D Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Hi all, I have installed the NBIR library. I try to load it in a R session but it fails. I have the error message : Error in readLines(con) : cannot open file `/usr/lib/R/library/annotate/data/hgu95v2fgroup' Could you help me ?? Thanks, Olivier -- -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- Olivier MARTIN PhD student phone: (33) 04 76 61 53 55 Projet IS2 06 08 67 93 42 INRIA Rhone-Alpes fax : (33) 04 76 61 54 77 655, Av. de l'Europe Montbonnot e-mail:olivier.martin@inrialpes.fr 38334 Saint Ismier cedex -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- --------------EC7355746203A2B4FADEEE3D Content-Type: text/html; charset=us-ascii Content-Transfer-Encoding: 7bit <html> Hi all,

I have installed the NBIR library.
I try to load it in a R session but it fails. I have the error message :

Error in readLines(con) : cannot open file `/usr/lib/R/library/annotate/data/hgu95v2fgroup'

Could you help me ??
Thanks,
Olivier

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Olivier MARTIN
PhD student          
;        phone: (33) 04 76 61 53 55
Projet IS2          
           &nbs
p;         06 08 67 93
42         
INRIA Rhone-Alpes         
;   fax  : (33) 04 76 61 54 77
655, Av. de l'Europe
Montbonnot          
        
e-mail:olivier.martin@inrialpes.fr
38334 Saint Ismier cedex
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ADD COMMENT • link updated 22.8 years ago by Laurent Gautier ▴ 150 • written 22.8 years ago by Olivier Martin ▴ 10

score 0 · Answer 1 · 2002-02-14

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John Zhang ★ 2.9k

@john-zhang-6

Last seen 10.2 years ago

Oliver, It failed because /usr/lib/R/library/annotate/data/hgu95v2fgroup is an old file we used before but does not exist in annotate/data any more. I will let the maintainer of the package know about the change and have the bug fixed. Thanks. Jianhua

ADD COMMENT • link 22.8 years ago John Zhang ★ 2.9k

score 0 · Answer 2 · 2002-02-14

hi -- my experience with NBIR under R 1.5 is that it fails because SNetscape and the methods library are incompatible. NBIR has not been touched for some time owing to that. If you have evidence to the contrary let me know and I will try to rebuild and correct the current bugs. Let me know what version of R you are running and on what platform please. --- Vince Carey, PhD Ass't Prof Med (Biostatistics) Harvard Medical School Channing Laboratory - ph 6175252265 fa 6177311541 181 Longwood Ave Boston MA 02115 USA stvjc@channing.harvard.edu -----BEGIN PGP PUBLIC KEY BLOCK----- Version: PGP 6.5.8 mQCNAzqIeGUAAAEEAMJXU941vIornTS52rl6z7eo+A7wwB0km/idLnkxzIhc1uLi Qtn19OyOfG6IDSucLrtmpvwagemAnQ9jL6TVDrmlrKnqsh+FFtvUuZ37eV85L70E BsS8RZCmMYHJKfrpCwegbTVZrEkd1ByquLIN/yUwxU4IcVuHxbNQk69riQ8tAAUR tBVWaW5jZW50IEouIENhcmV5LCBKci6JAJUDBRA6iHhls1CTr2uJDy0BAdsLA/wM cCzEDsP9MqodKZfDI1s/gXW6BcCuQ6n7MdEplLgmWvyqfbvRYx4upYZ3pNp8L0zU MrlR6eCTs/eDtMO/ZbGvkqqiQO6wS2fZb1T5L/DhhtT4mEAHt0E8dNBVCj+lKr3W vYS5GqO9gY4CiT3JXFH9N19pSbUQFiNDqpmG6EbWng== =DQNF -----END PGP PUBLIC KEY BLOCK----- On Thu, 14 Feb 2002, Olivier Martin wrote: > Hi all, > > I have installed the NBIR library. > I try to load it in a R session but it fails. I have the error message : > > Error in readLines(con) : cannot open file > `/usr/lib/R/library/annotate/data/hgu95v2fgroup' > > Could you help me ?? > Thanks, > Olivier > > -- > -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- > Olivier MARTIN > PhD student phone: (33) 04 76 61 53 55 > Projet IS2 06 08 67 93 42 > INRIA Rhone-Alpes fax : (33) 04 76 61 54 77 > 655, Av. de l'Europe > Montbonnot e-mail:olivier.martin@inrialpes.fr > 38334 Saint Ismier cedex > -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- > > >

score 0 · Answer 3 · 2002-02-14

Salut Olivier, Je ne suis pas certain de mon coup, mais il pourrait que ce soit du au fait qu'il faille egalement avoir la bibliotheque 'annotate'... ..est-ce le cas ? .....oups, sorry... summary of above: it might be cause by the package 'annotate' not installed (but I am not sure) Laurent Gautier CBS, Building 208, DTU PhD. Student D-2800 Lyngby,Denmark tel: +45 45 25 24 85 http://www.cbs.dtu.dk/laurent On Thu, 14 Feb 2002, Olivier Martin wrote: > Hi all, > > I have installed the NBIR library. > I try to load it in a R session but it fails. I have the error message : > > Error in readLines(con) : cannot open file > `/usr/lib/R/library/annotate/data/hgu95v2fgroup' > > Could you help me ?? > Thanks, > Olivier > > -- > -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- > Olivier MARTIN > PhD student phone: (33) 04 76 61 53 55 > Projet IS2 06 08 67 93 42 > INRIA Rhone-Alpes fax : (33) 04 76 61 54 77 > 655, Av. de l'Europe > Montbonnot e-mail:olivier.martin@inrialpes.fr > 38334 Saint Ismier cedex > -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- > > >