What is the status/plans for software to compute copy number (NOT genotype) from affy 500K chips in Bioconductor? I know about dChip and CNAG but would like a non Windows solution. thanks in advance nick socci

Have you looked at PLASQ? http://genome.dfci.harvard.edu/~tlaframb/PLASQ/ I've not used it, and I don't know if it's implemented for the 500K chips, but I think the theory behind it is nice. -Ben > -----Original Message----- > From: bioconductor-bounces at stat.math.ethz.ch [mailto:bioconductor- > bounces at stat.math.ethz.ch] On Behalf Of Nicholas D. Socci > Sent: Saturday, October 28, 2006 5:11 PM > To: bioconductor at stat.math.ethz.ch > Subject: [BioC] Computing Copy Number from Affy 500K SNP Chips > > What is the status/plans for software to compute copy number (NOT > genotype) from affy 500K chips in Bioconductor? I know about dChip > and CNAG but would like a non Windows solution. > > thanks in advance > > nick socci > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor