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Hi Galina, Glazko, Galina wrote: > Dear list, > > > > I was trying to use yeastCC package: > > It was installed successfully > > -------------------------------------------------------------------- ---- > ---------------- > > >>source("http://bioconductor.org/biocLite.R") > > >>biocLite('yeastCC') > > > Running getBioC version 0.1.8 with R version 2.3.1 > > Running biocinstall version 1.8.5 with R version 2.3.1 > > Your version of R requires version 1.8 of Bioconductor. > > trying URL > 'http://bioconductor.org/packages/1.8/data/experiment/bin/windows/co ntri > b/2.3/yeastCC_1.0.0.zip' > > Content type 'application/zip' length 2635164 bytes > > opened URL > > downloaded 2573Kb > > package 'yeastCC' successfully unpacked and MD5 sums checked > > -------------------------------------------------------------------- ---- > ---------------- > > > > But after that I got an error message: > > >>data(yeastCC) > > > Warning message: > > data set 'yeastCC' not found in: data(yeastCC) > > > > >>library(yeastCC) > > > Error in readChar(con, 5) : cannot open the connection > > In addition: Warning message: > > cannot open compressed file > 'C:/PROGRA~1/R/R-23~1.1/library/yeastCC/data/yeastCC.rda' > > Error in library("yeastCC") : .First.lib failed for 'yeastCC' > > > > Could someone please explain how it can be corrected? The quick fix for you is to go into C:/PROGRA~1/R/R-23~1.1/library/yeastCC/data and unzip the Rdata.zip file you will find there. Then the package will work as intended. HTH, Jim > > > > Thank you! > > Best regards > > Galina > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

James, Thank you! It works now. Best regards Galina -----Original Message----- From: James W. MacDonald [mailto:jmacdon@med.umich.edu] Sent: Wednesday, September 27, 2006 11:05 AM To: Glazko, Galina Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] data set 'yeastCC' not found in: data(yeastCC) Hi Galina, Glazko, Galina wrote: > Dear list, > > > > I was trying to use yeastCC package: > > It was installed successfully > > ---------------------------------------------------------------------- -- > ---------------- > > >>source("http://bioconductor.org/biocLite.R") > > >>biocLite('yeastCC') > > > Running getBioC version 0.1.8 with R version 2.3.1 > > Running biocinstall version 1.8.5 with R version 2.3.1 > > Your version of R requires version 1.8 of Bioconductor. > > trying URL > 'http://bioconductor.org/packages/1.8/data/experiment/bin/windows/cont ri > b/2.3/yeastCC_1.0.0.zip' > > Content type 'application/zip' length 2635164 bytes > > opened URL > > downloaded 2573Kb > > package 'yeastCC' successfully unpacked and MD5 sums checked > > ---------------------------------------------------------------------- -- > ---------------- > > > > But after that I got an error message: > > >>data(yeastCC) > > > Warning message: > > data set 'yeastCC' not found in: data(yeastCC) > > > > >>library(yeastCC) > > > Error in readChar(con, 5) : cannot open the connection > > In addition: Warning message: > > cannot open compressed file > 'C:/PROGRA~1/R/R-23~1.1/library/yeastCC/data/yeastCC.rda' > > Error in library("yeastCC") : .First.lib failed for 'yeastCC' > > > > Could someone please explain how it can be corrected? The quick fix for you is to go into C:/PROGRA~1/R/R-23~1.1/library/yeastCC/data and unzip the Rdata.zip file you will find there. Then the package will work as intended. HTH, Jim > > > > Thank you! > > Best regards > > Galina > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.