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daphne mouzaki RI
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80
@daphne-mouzaki-ri-1878
Last seen 10.2 years ago
hi,
I have generated a list of significant genes for 3 time points
separately using the function
"decideTests"in Limma package.Using this function I generated
foldchanges and FDR for every
gene using method Benjamini and Hochberg ("BH") and p.value=0.05.
I was wondering if it is possible to generate all the FDR and
foldchanges with the respective
gene name for every time point.
I tried changing the cut-off to 1 in order not to exclude anything and
the method set to the
function "decideTests" changed to "none" but it doesn't work.
Could you recommend any other possible ways?
I would appreciate any help,
Daphne