Hi, when I try to load affyPLM (latest version, from BioC 1.9) in R 2.4.0 I get a systems crash with the following error message: "R-2.4.0-devel_060826/lib/R/bin/exec/R: relocation error: R-2.4.x-libs-BioC/1.9/affyPLM/libs/affyPLM.so:undefined symbol: moduleCdynload" The library 'libR.so' seems to be the trouble maker: R 2.3.1 does contain symbol "moduleCdynload", while it seems to be called 'R_moduleCdynload' in 2.4.0 All the best -oli-

Hi Oliver, "Oliver Hartmann" <oliver.hartmann at="" epigenomics.com=""> writes: > when I try to load affyPLM (latest version, from BioC 1.9) in R 2.4.0 I > get a systems crash with the following error message: > > "R-2.4.0-devel_060826/lib/R/bin/exec/R: relocation error: > R-2.4.x-libs-BioC/1.9/affyPLM/libs/affyPLM.so:undefined symbol: > moduleCdynload" > > The library 'libR.so' seems to be the trouble maker: R 2.3.1 does > contain symbol "moduleCdynload", while it seems to be called > 'R_moduleCdynload' in 2.4.0 I can confirm that on Linux, affyPLM is not loadable. moduleCdynload does not appear to be part of R's public API. We will discuss this with the package's maintainer... + seth

I have fixed this issue for affyPLM 1.9.15. At least for now anyone who tries using affyPLM 1.9.15 on R-2.3.x will find it broken. However, if you are the sort of user who is mixing and matching devel and release packages you already know you are risking this sort of occurrence. Best, Ben On Mon, 2006-08-28 at 17:58 +0200, Oliver Hartmann wrote: > Hi, > > when I try to load affyPLM (latest version, from BioC 1.9) in R 2.4.0 I > get a systems crash with the following error message: > > "R-2.4.0-devel_060826/lib/R/bin/exec/R: relocation error: > R-2.4.x-libs-BioC/1.9/affyPLM/libs/affyPLM.so:undefined symbol: > moduleCdynload" > > The library 'libR.so' seems to be the trouble maker: R 2.3.1 does > contain symbol "moduleCdynload", while it seems to be called > 'R_moduleCdynload' in 2.4.0 > > All the best > > -oli- > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Ben Bolstad <bmb at="" bmbolstad.com=""> http://bmbolstad.com