Entering edit mode
@debashis-bhattacharya-1851
Last seen 10.1 years ago
I have installed R version 2.3.1, on Mac (OS 10.4.7, on an Intel
CoreDuo
iMac).
When I try to install bioconductor -- following instructions, using
biocLite() -- it downloads
the packages mentioned on the install page. However, the instatllation
does not complete.
I get the following message after the downloads are complete:
------
The downloaded packages are in
/tmp/RtmpJdBYlA/downloaded_packages
Warning messages:
1: number of rows of result
is not a multiple of vector length (arg 2) in: cbind(1, res0,
Repository = repos)
2: cannot create HTML package index in: make.packages.html()
------
I have tried installation with only one package (affy), and still face
the same problem. The entire log
for affy is as follows:
--------
> source("http://www.bioconductor.org/biocLite.R")
> biocLite(c("affy"))
Running getBioC version 0.1.6 with R version 2.3.1
Running biocinstall version 1.8.4 with R version 2.3.1
Your version of R requires version 1.8 of Bioconductor.
trying URL
'http://bioconductor.org/packages/1.8/bioc/bin/macosx/i386/contrib/2.3
/affy_1.10.0.tgz'
Content type 'application/x-gzip' length 1733585 bytes
opened URL
==================================================
downloaded 1692Kb
The downloaded packages are in
/tmp/RtmpJdBYlA/downloaded_packages
Warning messages:
1: number of rows of result
is not a multiple of vector length (arg 2) in: cbind(1, res0,
Repository = repos)
2: cannot create HTML package index in: make.packages.html()
---------
Please help.
Debashis Bhattacharya.
