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Tony Long
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10
@tony-long-1833
Last seen 10.2 years ago
All:
I am getting an error message with GoHyperG (and a similar error with
HyperGTable).
library("hgu95av2")
w1 <- as.list(hgu95avLOCUSID)
w2 <- unique(unlist(w1))
set.seed(123)
myLL1 <- sample(w2,100)
myLL2 <- c(myLL1, sample(w2,100))
xx <- GOHyperG(myLL1,"hgu95av2",what="BP",universe=myLL2)
Error: value for 'GO:0031997' not found
> sessionInfo()
Version 2.3.0 (2006-04-24)
i686-redhat-linux-gnu
attached base packages:
[1] "splines" "tools" "methods" "stats" "graphics"
"grDevices"
[7] "utils" "datasets" "base"
other attached packages:
drosophila2cdf drosophila2 GOstats Category
hgu95av2
"1.4.7" "1.12.0" "1.6.0" "1.4.1"
"1.12.0"
KEGG multtest genefilter survival
xtable
"1.8.1" "1.10.2" "1.10.1" "2.24"
"1.3-2"
RBGL annotate Biobase GO
graph
"1.8.1" "1.10.0" "1.10.1" "1.8.2"
"1.10.6"
Ruuid
"1.10.0"
Thanks!!
Tony
--
###########################
Tony Long
Ecology and Evolutionary Biology
Steinhaus Hall
University of California at Irvine
Irvine, CA
92697-2525
Tel: (949) 824-2562 (office)
Tel: (949) 824-5994 (lab)
Fax: (949) 824-2181
email: tdlong at uci.edu
http://hjmuller.bio.uci.edu/~labhome/