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Hi Alberto, If you have the AffyID and your expressions already in a suitable variable say exp<-exprs(YourData) than you can access your genes by exp["205108_s_at",] i.e. just take the quoted name. or in the case of more genes u<-c("205108_s_at","205109_s_at","205110_s_at") exp[u,] HTH, Bj?rn Alberto Goldoni wrote: > 1007_s_at > 9.773418 > 9.417764 > 9.704331 > 9.438276 > 9.568116 > 9.053595 > 9.841778 > 9.554048 > 9.432245 > 9.1237 > 9.771159 > 9.690103 > 9.348925 > > 1053_at > 6.072983 > 5.730914 > 5.607182 > 6.362973 > 5.70732 > 6.565309 > 5.817293 > 5.731544 > 5.523706 > 5.316244 > 5.775153 > 5.663145 > 5.739513 > > 117_at > 7.747965 > 7.629262 > 7.73452 > 8.067859 > 7.711633 > 8.303023 > 7.621385 > 7.420525 > 7.525388 > 7.264246 > 7.964381 > 7.456231 > 7.83009 > > 121_at > 10.16742 > 9.685334 > 9.744084 > 10.4171 > 9.780994 > 9.660844 > 10.23678 > 9.449423 > 9.652709 > 9.485964 > 10.13603 > 9.842141 > 9.838307 > > 1255_g_at > 5.42514 > 5.229015 > 5.229261 > 5.84701 > 5.140603 > 5.373801 > 5.157464 > 4.551891 > 4.593915 > 3.866779 > 5.169969 > 4.324811 > 4.515813 > > 1294_at > 8.265643 > 7.976936 > 8.100815 > 8.171472 > 8.355946 > 8.185782 > 8.293062 > 8.098337 > 8.162084 > 7.878817 > 8.457455 > 8.165796 > 8.463291 > > 1316_at > 6.980288 > 7.236847 > 7.208176 > 7.282764 > 7.41074 > 7.407931 > 7.067295 > 6.30754 > 7.002748 > 6.35752 > 7.331114 > 6.882863 > 7.37839 > > 1320_at > 6.928169 > 6.920746 > 6.843029 > 7.59307 > 6.951809 > 8.216043 > 6.691185 > 6.016126 > 6.558465 > 6.043662 > 7.086805 > 6.396637 > 6.705328 > > 1405_i_at > 5.988069 > 7.083437 > 6.791358 > 6.591842 > 6.712802 > 6.894005 > 6.601897 > 7.668467 > 6.839141 > 6.184923 > 6.713256 > 6.182589 > 7.378104 > > 1431_at > 5.633672 > 5.800623 > 5.787568 > 6.507979 > 5.974908 > 6.753845 > 5.306776 > 5.375425 > 5.321015 > 5.651037 > 6.154899 > 6.14569 > 5.502057 > > 1438_at > 6.905411 > 6.98525 > 6.937568 > 7.421796 > 7.116042 > 7.941822 > 6.867464 > 6.379621 > 6.625152 > 6.339178 > 7.331643 > 6.639255 > 6.974736 > > 1487_at > 7.262405 > 7.626227 > 7.490514 > 7.339316 > 7.756496 > 7.117072 > 7.467891 > 7.11783 > 7.55007 > 7.092514 > 7.443648 > 7.587545 > 7.302538 > > 1494_f_at > 7.790713 > 8.117243 > 7.914935 > 8.409387 > 8.347551 > 8.280409 > 7.604005 > 7.263992 > 7.918678 > 7.573609 > 8.096589 > 7.962468 > 8.009235 > > 1598_g_at > 10.52976 > 10.00731 > 10.1594 > 9.867169 > 10.25884 > 9.866183 > 10.45635 > 10.42678 > 9.869074 > 10.35704 > 9.852887 > 10.0193 > 10.47109 > > 160020_at > 7.336614 > 7.345166 > 7.59698 > 7.390977 > 7.563585 > 8.193511 > 7.535555 > 7.476941 > 7.281847 > 7.143455 > 7.855473 > 7.339494 > 7.699198 > > 1729_at > 8.105144 > 8.003012 > 8.02858 > 7.84866 > 7.900034 > 8.011177 > 7.975424 > 7.987605 > 7.784975 > 7.795312 > 7.700939 > 7.961976 > 7.895151 > > 1773_at > 6.880943 > 6.816446 > 6.921841 > 6.777104 > 7.026723 > 7.567743 > 6.824271 > 6.74689 > 6.16245 > 6.817917 > 6.548991 > 6.624156 > 5.974821 > > 177_at > 6.401632 > 5.977983 > 6.060015 > 6.214585 > 5.664696 > 5.910769 > 5.777777 > 5.708505 > 5.90576 > 5.691953 > 6.063443 > 6.040987 > 5.979138 > > 179_at > 8.943959 > 8.879219 > 8.951189 > 9.147981 > 9.203399 > 9.144783 > 9.073336 > 8.574457 > 8.663946 > 8.533174 > 8.790133 > 8.752009 > 8.656693 > > 1861_at > 5.538212 > 5.24173 > 5.494172 > 5.295668 > 5.897023 > 5.936249 > 5.725646 > 5.930735 > 5.517266 > 5.817869 > 5.678413 > 5.699507 > 5.538163 > > 200000_s_at > 8.427401 > 8.608713 > 8.014299 > 8.055125 > 9.342066 > 8.190798 > 8.755462 > 9.981011 > 9.161225 > 8.901431 > 7.992842 > 9.509603 > 7.94303 > > 200001_at > 9.567462 > 9.385634 > 9.859429 > 9.230186 > 9.397574 > 9.133397 > 9.523227 > 9.479184 > 9.405807 > 9.982452 > 8.924905 > 9.900494 > 9.456582 > > 200002_at > 10.72593 > 10.34343 > 10.73005 > 10.0797 > 10.55892 > 8.513151 > 11.1737 > 11.1069 > 11.34351 > 11.29894 > 10.02621 > 11.43864 > 10.01014 > ...... > ....... > ...... > ...... > ....... > ....... > > > sorry guys i have a little problem..i don't remember if i have a list of > genes (22.000 rows) vs N experiments if I need to extract only 5 genes > and I know the affy ID > for example APOB -> 205108_s_at > > how can extract a table with all the genes of my interest? > > Best regards > > Dr Alberto Goldoni > Medical Genetics Unit > S. Orsola-Malpighi Hospital > Via Massarenti n.9, Pad 11 > 40100 Bologna, Italy > Mobile Phone: 338-4145970 > Fax: 051-636-4004 > <mailto:alberto.goldoni at="" eurogene.org=""> alberto.goldoni at eurogene.org > <http: www.eurogene.org=""> www.eurogene.org > <http: www.lagem.it=""> www.lagem.it > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- -+-+-+-+-+-+-+-+-+-+-+- Bj?rn Usadel, PhD Max Planck Institute of Molecular Plant Physiology System Regulation Group Am M?hlenberg 1 D-14476 Golm Germany Tel (+49 331) 567-8114 Email usadel at mpimp-golm.mpg.de WWW mapman.mpimp-golm.mpg.de