Hope someone can point the right direction to solve the problem. Thanks. ---------- Forwarded message ---------- Date: Mon, 12 Jun 2006 14:11:32 +0100 (BST) From: zph@herald.ox.ac.uk To: r-bugs at r-project.org Subject: Ruuid had non-zero exit status > source("http://www.bioconductor.org/biocLite.R") > biocLite(c("Ruuid")) Running getBioC version 0.1.6 with R version 2.3.1 Running biocinstall version 1.8.4 with R version 2.3.1 Your version of R requires version 1.8 of Bioconductor. trying URL 'http://bioconductor.org/packages/1.8/bioc/src/contrib/Ruuid_1.10.0.ta r.gz' Content type 'application/x-gzip' length 72767 bytes opened URL ================================================== downloaded 71Kb * Installing *source* package 'Ruuid' ... checking for pkg-config... /usr/local/bin/pkg-config checking for glib-config... /usr/local/bin/glib-config checking for glib-2.0... yes checking PKG_CFLAGS... -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include checking PKG_LIBS... -L/usr/local/lib -lglib-2.0 -liconv checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... no checking for unistd.h... yes checking /usr/include/unistd.h usability... yes checking /usr/include/unistd.h presence... yes checking for /usr/include/unistd.h... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I/package/R/2.3.1/lib/R/include -I/package/R/2.3.1/lib/R/include -I/usr/local/include -I/ usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -O2 -D_F ILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -c Rinit.c -o Rinit.o In file included from /usr/local/include/glib-2.0/glib/galloca.h:30, from /usr/local/include/glib-2.0/glib.h:30, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gtypes.h:41: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib.h:31, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/garray.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/garray.h:34: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib/gerror.h:24, from /usr/local/include/glib-2.0/glib/gthread.h:30, from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30, from /usr/local/include/glib-2.0/glib.h:32, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gquark.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gquark.h:34: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gquark.h:41: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gquark.h:41: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gquark.h:41: warning: data definition has no type or storage cl ass In file included from /usr/local/include/glib-2.0/glib/gthread.h:30, from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30, from /usr/local/include/glib-2.0/glib.h:32, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gerror.h:26: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gerror.h:28: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gerror.h:40: error: parse error before "G_GNUC_PRINTF" /usr/local/include/glib-2.0/glib/gerror.h:40: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gerror.h:60: error: parse error before "G_GNUC_PRINTF" /usr/local/include/glib-2.0/glib/gerror.h:60: warning: data definition has no type or storage cl ass In file included from /usr/local/include/glib-2.0/glib/gthread.h:32, from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30, from /usr/local/include/glib-2.0/glib.h:32, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gatomic.h:35: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gatomic.h:37: error: syntax error before "gint" In file included from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30, from /usr/local/include/glib-2.0/glib.h:32, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gthread.h:34: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gthread.h:39: error: syntax error before "extern" /usr/local/include/glib-2.0/glib/gthread.h:255: error: parse error before "GSystemThread" /usr/local/include/glib-2.0/glib/gthread.h:255: warning: no semicolon at end of struct or union In file included from /usr/local/include/glib-2.0/glib.h:32, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gasyncqueue.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gasyncqueue.h:34: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib.h:34, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gbacktrace.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gbacktrace.h:43: error: syntax error before "void" In file included from /usr/local/include/glib-2.0/glib/glist.h:30, from /usr/local/include/glib-2.0/glib/gcache.h:30, from /usr/local/include/glib-2.0/glib.h:35, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gmem.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gmem.h:34: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gmem.h:48: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gmem.h:48: warning: data definition has no type or storage clas s /usr/local/include/glib-2.0/glib/gmem.h:49: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gmem.h:49: warning: data definition has no type or storage clas s /usr/local/include/glib-2.0/glib/gmem.h:53: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gmem.h:53: warning: data definition has no type or storage clas s /usr/local/include/glib-2.0/glib/gmem.h:74: error: parse error before "n_bytes" /usr/local/include/glib-2.0/glib/gmem.h:76: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gmem.h:79: error: parse error before "n_blocks" /usr/local/include/glib-2.0/glib/gmem.h:81: error: parse error before "n_bytes" /usr/local/include/glib-2.0/glib/gmem.h:83: error: parse error before "gsize" In file included from /usr/local/include/glib-2.0/glib/gcache.h:30, from /usr/local/include/glib-2.0/glib.h:35, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/glist.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/glist.h:34: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib.h:35, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gcache.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gcache.h:34: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib.h:36, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gcompletion.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gcompletion.h:34: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gcompletion.h:43: error: parse error before "gsize" In file included from /usr/local/include/glib-2.0/glib.h:37, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gconvert.h:33: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gconvert.h:35: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gconvert.h:56: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gconvert.h:63: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gconvert.h:68: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:70: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gconvert.h:74: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:76: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gconvert.h:82: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:88: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gconvert.h:91: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:93: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gconvert.h:96: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:109: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gconvert.h:112: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:114: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gconvert.h:117: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:121: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gconvert.h:121: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:125: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gconvert.h:125: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:126: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gconvert.h:126: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:127: error: parse error before "gchar" /usr/local/include/glib-2.0/glib/gconvert.h:129: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gconvert.h:129: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gconvert.h:131: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gconvert.h:131: warning: data definition has no type or storage class In file included from /usr/local/include/glib-2.0/glib.h:38, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gdataset.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gdataset.h:34: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib.h:39, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gdate.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gdate.h:43: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gdate.h:130: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:130: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:131: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:131: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:132: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:132: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:133: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:133: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:134: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:134: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:137: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:137: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:202: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:202: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:204: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:204: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:205: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:205: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:206: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gdate.h:206: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/gdate.h:229: error: parse error before "g_date_strftime" /usr/local/include/glib-2.0/glib/gdate.h:230: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gdate.h:232: warning: data definition has no type or storage cl ass In file included from /usr/local/include/glib-2.0/glib.h:40, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gdir.h:28: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gdir.h:30: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gdir.h:41: error: syntax error before "gchar" In file included from /usr/local/include/glib-2.0/glib.h:42, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gfileutils.h:26: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gfileutils.h:30: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gfileutils.h:87: error: parse error before "gsize" In file included from /usr/local/include/glib-2.0/glib.h:43, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/ghash.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/ghash.h:34: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/ghash.h:104: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/ghash.h:104: warning: data definition has no type or storage cl ass /usr/local/include/glib-2.0/glib/ghash.h:106: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/ghash.h:106: warning: data definition has no type or storage cl ass In file included from /usr/local/include/glib-2.0/glib.h:44, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/ghook.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/ghook.h:36: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib/gmain.h:23, from /usr/local/include/glib-2.0/glib/giochannel.h:31, from /usr/local/include/glib-2.0/glib.h:45, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gslist.h:32: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gslist.h:34: error: syntax error before "typedef" In file included from /usr/local/include/glib-2.0/glib/giochannel.h:31, from /usr/local/include/glib-2.0/glib.h:45, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gmain.h:26: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gmain.h:28: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gmain.h:35: error: parse error before "pid" /usr/local/include/glib-2.0/glib/gmain.h:251: error: parse error before "pid" /usr/local/include/glib-2.0/glib/gmain.h:296: error: parse error before "GPid" /usr/local/include/glib-2.0/glib/gmain.h:300: error: parse error before "pid" In file included from /usr/local/include/glib-2.0/glib/gstring.h:31, from /usr/local/include/glib-2.0/glib/giochannel.h:32, from /usr/local/include/glib-2.0/glib.h:45, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gunicode.h:28: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gunicode.h:30: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gunicode.h:114: error: parse error before "char" /usr/local/include/glib-2.0/glib/gunicode.h:118: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:118: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:119: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:119: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:120: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:120: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:121: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:121: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:122: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:122: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:123: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:123: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:124: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:124: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:125: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:125: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:126: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:126: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:127: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:127: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:128: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:128: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:129: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:129: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:130: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:130: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:131: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:131: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:135: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:135: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:136: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:136: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:137: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:137: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:141: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:141: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:143: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:143: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:146: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:146: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:149: error: parse error before "G_GNUC_CONST" /usr/local/include/glib-2.0/glib/gunicode.h:149: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:156: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gunicode.h:162: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gunicode.h:162: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:172: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:185: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:190: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gunicode.h:195: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:198: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:201: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:207: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gunicode.h:207: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:212: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gunicode.h:212: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:215: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gunicode.h:215: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:220: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gunicode.h:220: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:225: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gunicode.h:225: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:230: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gunicode.h:230: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:235: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gunicode.h:235: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:249: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:256: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:256: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:258: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:258: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:260: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:260: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:274: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:275: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gunicode.h:280: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gunicode.h:280: warning: data definition has no type or storage class In file included from /usr/local/include/glib-2.0/glib/gstring.h:32, from /usr/local/include/glib-2.0/glib/giochannel.h:32, from /usr/local/include/glib-2.0/glib.h:45, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gutils.h:33: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gutils.h:114: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:115: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:116: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:117: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:120: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:123: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:124: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:125: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:126: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:126: error: parse error before '*' token /usr/local/include/glib-2.0/glib/gutils.h:126: warning: data definition has no type or storage c lass /usr/local/include/glib-2.0/glib/gutils.h:127: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:127: error: parse error before '*' token /usr/local/include/glib-2.0/glib/gutils.h:127: warning: data definition has no type or storage c lass /usr/local/include/glib-2.0/glib/gutils.h:129: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:129: error: parse error before '*' token /usr/local/include/glib-2.0/glib/gutils.h:129: warning: data definition has no type or storage c lass /usr/local/include/glib-2.0/glib/gutils.h:147: error: parse error before "G_GNUC_PRINTF" /usr/local/include/glib-2.0/glib/gutils.h:147: warning: data definition has no type or storage c lass /usr/local/include/glib-2.0/glib/gutils.h:157: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:165: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/gutils.h:176: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gutils.h:176: warning: data definition has no type or storage c lass /usr/local/include/glib-2.0/glib/gutils.h:177: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gutils.h:177: warning: data definition has no type or storage c lass /usr/local/include/glib-2.0/glib/gutils.h:191: error: syntax error before "gchar" In file included from /usr/local/include/glib-2.0/glib/giochannel.h:32, from /usr/local/include/glib-2.0/glib.h:45, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gstring.h:34: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gstring.h:36: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gstring.h:42: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gstring.h:42: warning: no semicolon at end of struct or union /usr/local/include/glib-2.0/glib/gstring.h:43: warning: data definition has no type or storage c lass /usr/local/include/glib-2.0/glib/gstring.h:48: error: parse error before "size" /usr/local/include/glib-2.0/glib/gstring.h:54: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:63: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:64: error: parse error before "dfl_size" /usr/local/include/glib-2.0/glib/gstring.h:73: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gstring.h:75: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gstring.h:77: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:84: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:97: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:99: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:102: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:105: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:108: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstring.h:114: error: parse error before "G_GNUC_PRINTF" /usr/local/include/glib-2.0/glib/gstring.h:114: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gstring.h:117: error: parse error before "G_GNUC_PRINTF" /usr/local/include/glib-2.0/glib/gstring.h:117: warning: data definition has no type or storage class In file included from /usr/local/include/glib-2.0/glib.h:45, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/giochannel.h:34: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/giochannel.h:39: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/giochannel.h:116: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:116: warning: no semicolon at end of struct or uni on /usr/local/include/glib-2.0/glib/giochannel.h:124: error: parse error before ':' token /usr/local/include/glib-2.0/glib/giochannel.h:125: error: parse error before ':' token /usr/local/include/glib-2.0/glib/giochannel.h:126: error: parse error before ':' token /usr/local/include/glib-2.0/glib/giochannel.h:127: error: parse error before ':' token /usr/local/include/glib-2.0/glib/giochannel.h:128: error: parse error before ':' token /usr/local/include/glib-2.0/glib/giochannel.h:129: error: parse error before ':' token /usr/local/include/glib-2.0/glib/giochannel.h:133: error: parse error before '}' token /usr/local/include/glib-2.0/glib/giochannel.h:142: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:147: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:172: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:176: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:204: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:205: error: parse error before "g_io_channel_get_b uffer_size" /usr/local/include/glib-2.0/glib/giochannel.h:205: warning: data definition has no type or stora ge class /usr/local/include/glib-2.0/glib/giochannel.h:214: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/giochannel.h:222: error: syntax error before "gchar" /usr/local/include/glib-2.0/glib/giochannel.h:232: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:237: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:241: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:245: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/giochannel.h:253: error: parse error before "gssize" In file included from /usr/local/include/glib-2.0/glib.h:46, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gkeyfile.h:28: error: parse error before "G_BEGIN_DECLS" /usr/local/include/glib-2.0/glib/gkeyfile.h:30: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gkeyfile.h:63: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:72: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:73: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:74: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gkeyfile.h:74: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:76: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:76: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:79: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:80: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:90: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gkeyfile.h:90: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:98: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gkeyfile.h:98: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:107: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gkeyfile.h:107: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:132: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:133: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:138: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:143: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:144: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:150: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:154: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:155: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:160: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:164: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:165: warning: data definition has no type or storage class /usr/local/include/glib-2.0/glib/gkeyfile.h:170: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gkeyfile.h:179: error: parse error before "G_GNUC_MALLOC" /usr/local/include/glib-2.0/glib/gkeyfile.h:179: warning: data definition has no type or storage class In file included from /usr/local/include/glib-2.0/glib.h:50, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gmarkup.h:30: error: syntax error before "typedef" /usr/local/include/glib-2.0/glib/gmarkup.h:77: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gmarkup.h:88: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gmarkup.h:107: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gmarkup.h:121: error: parse error before "gssize" In file included from /usr/local/include/glib-2.0/glib.h:52, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gmessages.h:44: error: parse error before "g_printf_string_uppe r_bound" /usr/local/include/glib-2.0/glib/gmessages.h:109: error: parse error before "G_GNUC_INTERNAL" In file included from /usr/local/include/glib-2.0/glib.h:57, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gqsort.h:37: error: parse error before "gsize" In file included from /usr/local/include/glib-2.0/glib.h:65, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gspawn.h:80: error: parse error before "GPid" /usr/local/include/glib-2.0/glib/gspawn.h:93: error: parse error before "GPid" /usr/local/include/glib-2.0/glib/gspawn.h:123: error: parse error before "pid" In file included from /usr/local/include/glib-2.0/glib.h:66, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gstrfuncs.h:104: error: parse error before "g_strlcpy" /usr/local/include/glib-2.0/glib/gstrfuncs.h:106: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:106: warning: data definition has no type or storag e class /usr/local/include/glib-2.0/glib/gstrfuncs.h:107: error: parse error before "g_strlcat" /usr/local/include/glib-2.0/glib/gstrfuncs.h:109: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:109: warning: data definition has no type or storag e class /usr/local/include/glib-2.0/glib/gstrfuncs.h:111: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:116: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:156: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:158: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:160: error: parse error before "gssize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:188: error: parse error before "gsize" /usr/local/include/glib-2.0/glib/gstrfuncs.h:189: error: parse error before "length" make: *** [Rinit.o] Error 1 chmod: failed to get attributes of `/package/R/2.3.1/lib/R/library/Ruuid/libs/*': No such file o r directory ERROR: compilation failed for package 'Ruuid' ** Removing '/package/R/2.3.1/lib/R/library/Ruuid' ** Restoring previous '/package/R/2.3.1/lib/R/library/Ruuid' The downloaded packages are in /databank/temp/RtmptvZa7V/downloaded_packages Warning message: installation of package 'Ruuid' had non-zero exit status in: install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, > --please do not edit the information below-- Version: platform = sparc-sun-solaris2.9 arch = sparc os = solaris2.9 system = sparc, solaris2.9 status = major = 2 minor = 3.1 year = 2006 month = 06 day = 01 svn rev = 38247 language = R version.string = Version 2.3.1 (2006-06-01) Locale: C Search Path: .GlobalEnv, package:methods, package:stats, package:graphics, package:grDevices, package:utils, package:datasets, Autoloads, package:base

zph at herald.ox.ac.uk writes: > Hope someone can point the right direction to solve > the problem. Thanks. Hmm, what version of glib-2.0 do you have? Try: pkg-config --modversion glib-2.0 What version of gcc? + seth

zph at herald.ox.ac.uk writes: > Hi, > > I must say that the same gcc and glib2 work fine to compile > R pre-2.3.x It is strange. > Here're some additional information: > > zph at orac [zph]$ gcc --version > gcc (GCC) 3.4.2 Same as what we are using on our Solaris test system which is Solaris 2.9, R 2.3.1. > zph at orac [zph]$ pkg-config --modversion glib-2.0 > 2.6.2 We have 2.2.3 and I only have 2.4.6 on my laptop so one possibility is that the newest glib-2.0 has enough changes that Ruuid needs fixing. That seems most likely. We will investigate. Thanks, + seth