Problems regarding DESeq2 package installation in R
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@thomaskim1995-24014
Last seen 4.1 years ago

Hello, I am trying to install DESeq2 in R but I am running into problems where multiple packages have non-zero exit status and thus are not installing properly.

i.e.)

dyld: lazy symbol binding failed: Symbol not found: _utimensat
  Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib (which was built for Mac OS X 10.13)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: _utimensat
  Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib (which was built for Mac OS X 10.13)
  Expected in: /usr/lib/libSystem.B.dylib

/Library/Frameworks/R.framework/Resources/bin/INSTALL: line 34:  3163 Done                    echo 'tools:::.install_packages()'
      3164 Abort trap: 6           | R_DEFAULT_PACKAGES= LC_COLLATE=C "${R_HOME}/bin/R" $myArgs --no-echo --args ${args}

The downloaded source packages are in
    ‘/private/var/folders/3p/sq3f3xwn2514bdl766r2jmj80000gn/T/RtmpcyqTMP/downloaded_packages’
Warning messages:
1: In install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  installation of package ‘dplyr’ had non-zero exit status
2: In install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  installation of package ‘pbapply’ had non-zero exit status
3: In install.packages(update[instlib == l, "Package"], l, repos = repos,  :
  installation of package ‘MASS’ had non-zero exit status

Can anyone help me install the DESeq2 package? I've tried installing the other packages independently, but I am still running into the same problem.

deseq2 • 611 views
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To help, can you show the exact command that you have used to try to install DESeq2? Please also show the output of sessionInfo()

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Can you also show the full command and output you used to try an install?

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