Hi, I've add the libmpi.so.0 path to $LD_LIBRARY_PATH, now error is: > library("Rmpi") Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so': /usr/local/lam-7.1.2/lib/liblam.so.0: undefined symbol: openpty Error in library("Rmpi") : .First.lib failed for 'Rmpi' Error in dyn.unload(x) : dynamic/shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded What does it mean? I'm not so familar with linux, any help will be appreciated! Thanks a lot! Bin

You'll have more luck posting to the r-help list since this is not a BioC-specific problem. --Jake On Fri, 2006-06-09 at 14:27 -0400, Ye, Bin wrote: > Hi, > > I've add the libmpi.so.0 path to $LD_LIBRARY_PATH, now error is: > > library("Rmpi") > Error in dyn.load(x, as.logical(local), as.logical(now)) : > unable to load shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so': > /usr/local/lam-7.1.2/lib/liblam.so.0: undefined symbol: openpty > Error in library("Rmpi") : .First.lib failed for 'Rmpi' > Error in dyn.unload(x) : dynamic/shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded > > What does it mean? I'm not so familar with linux, any help will be appreciated! > Thanks a lot! > > > Bin > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

Thank you! I actually get it done successfully after set LD_LIBRARY_PATH and LD_PRELOAD. Bin -----Original Message----- From: Jake [mailto:jjmichael@comcast.net] Sent: Fri 6/9/2006 3:18 PM To: Ye, Bin Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] Rmpi loading error --- updates You'll have more luck posting to the r-help list since this is not a BioC-specific problem. --Jake On Fri, 2006-06-09 at 14:27 -0400, Ye, Bin wrote: > Hi, > > I've add the libmpi.so.0 path to $LD_LIBRARY_PATH, now error is: > > library("Rmpi") > Error in dyn.load(x, as.logical(local), as.logical(now)) : > unable to load shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so': > /usr/local/lam-7.1.2/lib/liblam.so.0: undefined symbol: openpty > Error in library("Rmpi") : .First.lib failed for 'Rmpi' > Error in dyn.unload(x) : dynamic/shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded > > What does it mean? I'm not so familar with linux, any help will be appreciated! > Thanks a lot! > > > Bin > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor