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Ann Hess
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340
@ann-hess-251
Last seen 10.2 years ago
I am trying to use the expresso command to get MBEI values. I get the
following errors. Note that I was able to use expresso to get RMA and
MAS
values for the same data without any errors. Any suggestions?
>
eset3<-expresso(data,normalize.method="invariantset",bg.correct=FALSE,
pmcorrect.method="pmonly",summary.method="liwong")
normalization: invariantset
PM/MM correction : pmonly
expression values: liwong
normalizing...done.
7129 ids to be processed
.Error in quantile.default(sigma.theta, normal.array.quantile) :
Missing values and NaN's not allowed if `na.rm' is FALSE
In addition: Warning messages:
1: No convergence achieved in outlier loop
in: fit.li.wong(probes, ...)
2: No convergence achieved in outlier loop
in: fit.li.wong(probes, ...)
3: No convergence achieved in outlier loop
in: fit.li.wong(probes, ...)
4: No convergence achieved in outlier loop
in: fit.li.wong(probes, ...)
5: No convergence achieved in outlier loop
in: fit.li.wong(probes, ...)
Error in name.levels(cdf) : Object "cdf" not found
Ann
